Response of macrofaunal assemblages to different pollution pressures of two types of ports

•Pollution status of two types of ports were assessed using macrofaunal assemblages.•Ecological quality status showed a negative correlation with the offshore distance.•AMBI, M−AMBI, and H' were not good indicators for heavy metal pollution.•Dominant polychaete species were good indicators for heavy metal pollution. Pollution status and benthic ecological quality of the two types of ports were assessed based on heavy metals and macrofaunal assemblages. Macrofaunal abundance and biomass in the industrial port were significantly higher than those in the fishing port. The dominant species of the two ports were Echinocardium cordatum and Nephtys oligobranchia. The AZTI marine biotic index (AMBI), multivariate AMBI, and Shannon-Wiener diversity index demonstrated that the benthic ecological quality of the two ports was moderate to good. The benthic ecological quality of the distant port sites was better than those of the nearby port sites. The geoaccumulation index and the Hakanson potential ecological risk index indicated that mercury posed a serious threat to port sediment pollution. AMBI, multivariate AMBI, and Shannon-Wiener diversity index were not good indicators for heavy metal pollution. The dominant species and Pielou’s evenness index were significantly correlated with heavy metal pollution and were good biological indicators.