Genome-Wide Characterization and Expression Analysis of KH Family Genes Response to ABA and SA in Arabidopsis thaliana
K-homologous (KH) family is a type of nucleic acid-binding protein containing the KH domain and has been found to affect splicing and transcriptional regulation. However, KH family genes haven't been investigated in plant species systematically. In this study, we identified 30 genes that belong...
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Veröffentlicht in: | International journal of molecular sciences 2022-01, Vol.23 (1), p.511 |
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Sprache: | eng |
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Zusammenfassung: | K-homologous (KH) family is a type of nucleic acid-binding protein containing the KH domain and has been found to affect splicing and transcriptional regulation. However, KH family genes haven't been investigated in plant species systematically. In this study, we identified 30 genes that belonged to the KH family based on HMM of the KH domain in
. Phylogenetic tree analysis showed that the KH family is grouped into three subgroups. Synteny analysis showed that
and
have the conserved synteny relationship between
and the other five species. The
and
were located in the cytoplasm and nucleus. The seed germination rates of the mutants
and
were higher than wild-type after abscisic acid (ABA) and salicylic acid (SA) treatments. In addition, the expression of ABA-related genes, such as
(
),
(
), and
(
), and an SA-related gene
(
) were downregulated after ABA and SA treatments, respectively. These results suggested that
and
mutants inhibit the effect of ABA and SA on seed germination. In conclusion, our results provide valuable information for further exploration of the function of KH family genes and propose directions and ideas for the identification and characterization of KH family genes in other plants. |
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ISSN: | 1422-0067 1661-6596 1422-0067 |
DOI: | 10.3390/ijms23010511 |