Identification of microbial community in the urban environment: The concordance between conventional culture and nanopore 16S rRNA sequencing

Identification of microbial community in the urban environment: The concordance between conventional culture and nanopore 16S rRNA sequencing

Microbes in the built environment have been implicated as a source of infectious diseases. Bacterial culture is the standard method for assessing the risk of exposure to pathogens in urban environments, but this method only accounts for

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Veröffentlicht in:Frontiers in microbiology 2023-04, Vol.14, p.1164632-1164632
Hauptverfasser: Lee, Annie Wing-Tung, Chan, Chloe Toi-Mei, Wong, Lily Lok-Yee, Yip, Cheuk-Yi, Lui, Wing-Tung, Cheng, Kai-Chun, Leung, Jake Siu-Lun, Lee, Lam-Kwong, Wong, Ivan Tak-Fai, Ng, Timothy Ting-Leung, Lao, Hiu-Yin, Siu, Gilman Kit-Hang
Format: Artikel
Sprache:eng
Schlagworte:
16S rRNA gene sequencing
conventional culture
Microbiology
nanopore sequencing
taxonomic classifiers
urban microbiome
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Beschreibung
Zusammenfassung:Microbes in the built environment have been implicated as a source of infectious diseases. Bacterial culture is the standard method for assessing the risk of exposure to pathogens in urban environments, but this method only accounts for
ISSN:1664-302X
1664-302X
DOI:10.3389/fmicb.2023.1164632