High-Quality Complete Genome Resource of Pathogenic Bacterium Pectobacterium atrosepticum Strain Green1 Isolated from Potato ( Solanum tuberosum L.) in Greenland

is a narrow-host-range, pectinolytic, plant-pathogenic bacterium causing blackleg of potato ( L.) worldwide. Till present, several genomes have been sequenced and characterized in detail; however, all of these genomes have come from isolates from plants grown in temperate zones, not from hosts culti...

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Veröffentlicht in:Molecular plant-microbe interactions 2021-11, Vol.34 (11), p.1328-1333
Hauptverfasser: Czajkowski, Robert, Rabalski, Lukasz, Kosinski, Maciej, de Neergaard, Eigil, Harding, Susanne
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Sprache:eng
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Zusammenfassung:is a narrow-host-range, pectinolytic, plant-pathogenic bacterium causing blackleg of potato ( L.) worldwide. Till present, several genomes have been sequenced and characterized in detail; however, all of these genomes have come from isolates from plants grown in temperate zones, not from hosts cultivated under different climatic conditions. Herewith, we present the first complete, high-quality genome of the strain Green1 isolated from potato plants grown under a subarctic climate in Greenland. The genome of strain Green1 consists of one chromosome of 4,959,719 bp, with a GC content of 51% and no plasmids. The genome contains 4,531 annotated features, including 4,179 protein-coding genes, 22 ribosomal RNA genes, 70 transfer RNA genes, 8 noncoding RNA genes, 2 CRISPRs, and 126 pseudogenes. We believe that the information in this first high-quality, complete, closed genome of strains isolated from host plants grown in a subarctic agricultural region will provide resources for comparative genomic studies and for analyses targeting climatic adaptation and ecological fitness mechanisms present in .[Formula: see text] Copyright © 2021 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license.
ISSN:0894-0282
1943-7706
DOI:10.1094/MPMI-06-21-0130-A