Applying machine learning for multi-individual Raman spectroscopic data to identify different stages of proliferating human hepatocytes

Cell therapy using proliferating human hepatocytes (ProliHHs) is an effective treatment approach for advanced liver diseases. However, rapid and accurate identification of high-quality ProliHHs from different donors is challenging due to individual heterogeneity. Here, we developed a machine learning framework to integrate single-cell Raman spectroscopy from multiple donors and identify different stages of ProliHHs. A repository of more than 14,000 Raman spectra, consisting of primary human hepatocytes (PHHs) and different passages of ProliHHs from six donors, was generated. Using a sliding window algorithm, potential biomarkers distinguishing the different cell stages were identified through differential analysis. Leveraging machine learning models, accurate classification of cell stages was achieved in both within-donor and cross-donor prediction tasks. Furthermore, the study assessed the relationship between donor and cell numbers and its impact on prediction accuracy, facilitating improved quality control design. A similar workflow can also be extended to encompass other cell types. [Display omitted] •Repository of 14,000 Raman spectra from primary and proliferating hepatocytes•Potential biomarker identification by sliding window analysis•Accurate cell stage identification using machine learning models•Sample size planning for feasible in-process control in cell product manufacturing Physics; Biological sciences; Computer science