Systemic mechanism of Panax noteginseng saponins in antiaging based on network pharmacology combined with experimental validation
This study aims to investigate the systemic mechanism of Panax notoginseng saponins (PNS) in antiaging using network pharmacology combined with experimental validation. String database and Cytoscape3.7.2 were used to perform the protein–protein interaction (PPI) and construct genes network. The key...
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Veröffentlicht in: | Ibrain 2024, Vol.10 (4), p.519-535 |
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Zusammenfassung: | This study aims to investigate the systemic mechanism of Panax notoginseng saponins (PNS) in antiaging using network pharmacology combined with experimental validation. String database and Cytoscape3.7.2 were used to perform the protein–protein interaction (PPI) and construct genes network. The key target genes were analyzed using gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG). Then, the aging‐related genes were verified by reverse‐transcription polymerase chain reaction in SAM‐P/8 mice, and performed molecular docking with the main components of PNS. Moreover, it produced cluster between Hub genes and differential genes. A total of 169 crossover genes were obtained, and the results of GO and KEGG indicated that the antiaging effect of PNS was mediated by apoptosis, cancer, and neurodegeneration and that five of the eight Hub genes had good binding activity with the main components of PNS. In addition, animal experiments reported that MAP2, MAPKK4, RAB6A, and Sortilin‐1 have different levels of expression in the brain tissues of aging mice, and bind well docking with the main active components of PNS. However, there was no crossover between the 169 PNS intersecting genes and the four differential genes, while they yielded a link from PPI in which MAP2K4 was only linked to AKT1 and CASP3; MAP2 was only linked to AKT1 and CASP3; RAB6A was only linked to AKT1; but Sortlin‐1 did not link to the Hub genes. In summary, the antiaging effect of PNS is associated with the eight Hub genes and four differential genes. All of them consist of a cluster or group that is possibly related to the antiaging effect of PNS.
In this study, we utilized network pharmacology and molecular docking techniques to explore the main targets and possible mechanisms of Panax notoginseng saponins (PNS) antiaging. By querying PNS‐related target genes and aging‐related genes, the first eight core genes were constructed and gene ontology, Kyoto Encyclopedia of Genes and Genomes analysis, and molecular docking were performed. These results indicate that the antiaging effect of PNS is achieved through the synergistic effect of apoptosis, cancer, neurodegeneration, and other pathways. However, unlike previous studies, animal experiments in the PNS group revealed a decrease in the expression of MAP2, MAPKK4, Rab6A, and Sortilin‐1. They may be new antiaging targets. |
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ISSN: | 2313-1934 2769-2795 2769-2795 |
DOI: | 10.1002/ibra.12165 |