Transcriptomes of developing fruit of cultivated and wild tomato species

In this paper we report and make available to the research community an extensive data of gene transcript information (whole-transcript RNA-seq) from fruit of 44 tomato accessions, comprising two studies. In order to ascertain the significance of transcriptomic patterns to evolutionary and phylogenetic relationships, we compared the phylogenetic tree developed from analysis of transcriptome-derived sequence polymorphisms to the hierarchical tree based on gene expression patterns. [...]a hierarchical tree and heatmap (Fig. 1E) was generated based on the ripe fruit transcriptomes, utilizing the expression patterns of the ~ 7000 genes that showed at least a fourfold differential expression (adjusted p value