Visualisation of nucleotide sequences

Visualisation of nucleotide sequences

The paper reviews the visualisation problems of genetic sequences and of their analysis results as well as other related problems. A possible formulation of the problem based on similarity, complexity measure (distance) between DNA sequences is proposed. It is solved by making use of multidimensiona...

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Veröffentlicht in:Lietuvos matematikos rinkinys 2023-09, Vol.46 (spec.), p.390-396
1. Verfasser: Rekašius, Tomas
Format: Artikel
Sprache:eng
Schlagworte:
complexity measure
DNA sequences
multidimensional scaling
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Beschreibung
Zusammenfassung:The paper reviews the visualisation problems of genetic sequences and of their analysis results as well as other related problems. A possible formulation of the problem based on similarity, complexity measure (distance) between DNA sequences is proposed. It is solved by making use of multidimensional scaling (MDS) of principal component analysis (PCA) methods. Šiame darbe apžvelgiami genetinių sekų ir jų tyrimų rezultatų vizualizavimo uždaviniai ir su jais susijusios problemos. Pateikiamas binarinių kodų išrikiavimo ant tiesės metodas ir juo paremta „genomo parašo“ modifikacija.
ISSN:0132-2818
2335-898X
DOI:10.15388/LMR.2006.30765