Piikun: an information theoretic toolkit for analysis and visualization of species delimitation metric space

Existing software for comparison of species delimitation models do not provide a (true) metric or distance functions between species delimitation models, nor a way to compare these models in terms of relative clustering differences along a lattice of partitions. Piikun is a Python package for analyz...

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Veröffentlicht in:BMC bioinformatics 2024-12, Vol.25 (1), p.385-11, Article 385
Hauptverfasser: Sukumaran, Jeet, Meila, Marina
Format: Artikel
Sprache:eng
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Zusammenfassung:Existing software for comparison of species delimitation models do not provide a (true) metric or distance functions between species delimitation models, nor a way to compare these models in terms of relative clustering differences along a lattice of partitions. Piikun is a Python package for analyzing and visualizing species delimitation models in an information theoretic framework that, in addition to classic measures of information such as the entropy and mutual information [1], provides for the calculation of the Variation of Information (VI) criterion [2], a true metric or distance function for species delimitation models that is aligned with the lattice of partitions. Piikun is available under the MIT license from its public repository ( https://github.com/jeetsukumaran/piikun ), and can be installed locally using the Python package manager 'pip'.
ISSN:1471-2105
1471-2105
DOI:10.1186/s12859-024-05997-y