Chromosome-level genome assembly of the yellow-cheek carp Elopichthys bambusa

Yellow-cheek carp ( Elopichthys bambusa ) is a typical large and ferocious carnivorous fish endemic to East Asia, with high growth rate, nutritional value and economic value. In this study, a chromosome-level genome of yellow-cheek carp was generated by combining PacBio reads, Illumina reads and Hi-...

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Veröffentlicht in:Scientific data 2024-04, Vol.11 (1), p.426-426, Article 426
Hauptverfasser: Li, Shunyao, Xiong, Xuemei, Qiu, Siyu, Shen, Zhigang, He, Yan, Gao, Zexia, Wan, Shiming
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Sprache:eng
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Zusammenfassung:Yellow-cheek carp ( Elopichthys bambusa ) is a typical large and ferocious carnivorous fish endemic to East Asia, with high growth rate, nutritional value and economic value. In this study, a chromosome-level genome of yellow-cheek carp was generated by combining PacBio reads, Illumina reads and Hi-C data. The genome size is 827.63 Mb with a scaffold N50 size of 33.65 Mb, and 99.51% (823.61 Mb) of the assembled sequences were anchored to 24 pseudo-chromosomes. The genome is predicted to contain 24,153 protein-coding genes, with 95.54% having functional annotations. Repeat elements account for approximately 55.17% of the genomic landscape. The completeness of yellow-cheek carp genome assembly is highlighted by a BUSCO score of 98.4%. This genome will help us understand the genetic diversity of yellow-cheek carp and facilitate its conservation planning.
ISSN:2052-4463
2052-4463
DOI:10.1038/s41597-024-03262-8