Genetic diversity of native Turkish cattle breeds: Mantel, AMOVA and bottleneck analysis

Genetic diversity of native Turkish cattle breeds: Mantel, AMOVA and bottleneck analysis

This study was conducted to evaluate potential extinction risk of Turkish native cattle breeds using Mantel and AMOVA tests and Bottleneck analysis. A total of 271 DNA samples were isolated from Anatolian Black, Anatolian Grey, South Anatolian Red, Native Southern Anatolian Yellow, East Anatolian Re...

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Veröffentlicht in:Journal of advanced veterinary and animal research 2014-09, Vol.1 (3), p.86-93
Hauptverfasser: Ozsensoy, Yusuf, Kurar, Ercan
Format: Artikel
Sprache:eng
Schlagworte:
Alleles
AMOVA
Bottleneck
Bovidae
Breeding of animals
Capillary electrophoresis
Cattle
Correlation analysis
Deoxyribonucleic acid
DNA
Electrophoresis
Extinction
Genetic diversity
Genetic testing
Genotypes
Heterozygosity
Mantel
Microsatellite
Microsatellites
Multivariate analysis
Normal distribution
Population
Statistical analysis
Statistical methods
Studies
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Beschreibung
Zusammenfassung:This study was conducted to evaluate potential extinction risk of Turkish native cattle breeds using Mantel and AMOVA tests and Bottleneck analysis. A total of 271 DNA samples were isolated from Anatolian Black, Anatolian Grey, South Anatolian Red, Native Southern Anatolian Yellow, East Anatolian Red, and Zavot cattle. In this study, genotypes of 20 microsatellites were determined by capillary electrophoresis and fragment analysis. A total of 269 different alleles were detected. The maximum and minimum numbers of total alleles were observed in TGLA122 (n=26) and INRA005 (n=7) loci, respectively. The highest average observed and expected heterozygosity values were determined as 0.619-0.852 and 0.669-0.877, respectively. The average FIS value was 0.068. Results of AMOVA and Mantel tests illustrated statistically significant differences in populations (p
ISSN:2311-7710
2311-7710
DOI:10.5455/javar.2014.a21