Community-wide hackathons to identify central themes in single-cell multi-omics

[...]dimension reduction approaches can extract and combine latent components of global variance that are shared between data modalities [8], thereby learning novel cellular and molecular pathways associated with biological processes directly from the data. [...]biological discovery of the regulator...

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Veröffentlicht in:Genome Biology 2021-08, Vol.22 (1), p.220-220, Article 220
Hauptverfasser: Lê Cao, Kim-Anh, Abadi, Al J, Davis-Marcisak, Emily F, Hsu, Lauren, Arora, Arshi, Coullomb, Alexis, Deshpande, Atul, Feng, Yuzhou, Jeganathan, Pratheepa, Loth, Melanie, Meng, Chen, Mu, Wancen, Pancaldi, Vera, Sankaran, Kris, Righelli, Dario, Singh, Amrit, Sodicoff, Joshua S, Stein-O'Brien, Genevieve L, Subramanian, Ayshwarya, Welch, Joshua D, You, Yue, Argelaguet, Ricard, Carey, Vincent J, Dries, Ruben, Greene, Casey S, Holmes, Susan, Love, Michael I, Ritchie, Matthew E, Yuan, Guo-Cheng, Culhane, Aedin C, Fertig, Elana
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Sprache:eng
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Zusammenfassung:[...]dimension reduction approaches can extract and combine latent components of global variance that are shared between data modalities [8], thereby learning novel cellular and molecular pathways associated with biological processes directly from the data. [...]biological discovery of the regulatory processes that span molecular scales is an active area of biological research and a key motivation for generating multi-modal single-cell datasets. [...]gene expression depends on gene regulatory element activity and thus requires an experimental design that must also account for spatial and temporal elements for a given cell. [...]defining a specific data integration task, and benchmarking the computational performance of the method for assessment relies on multi-modal data with specific study designs. [...]we can validate analysis approaches by benchmarking several algorithms and methods on the same dataset, allowing for open comparison of both standard and new methodologies.
ISSN:1474-760X
1474-7596
1474-760X
DOI:10.1186/s13059-021-02433-9