Genome-Wide Survey and Expression Analysis of the KT/HAK/KUP Family in Brassica napus and Its Potential Roles in the Response to K + Deficiency
The KT/HAK/KUP (HAK) family is the largest potassium (K ) transporter family in plants, which plays key roles in K uptake and homeostasis, stress resistance, and root and embryo development. However, the HAK family has not yet been characterized in . In this study, 40 putative HAK genes ( ) are iden...
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Veröffentlicht in: | International journal of molecular sciences 2020-12, Vol.21 (24), p.9487 |
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Hauptverfasser: | , , , , , , , , , , |
Format: | Artikel |
Sprache: | eng |
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Zusammenfassung: | The KT/HAK/KUP (HAK) family is the largest potassium (K
) transporter family in plants, which plays key roles in K
uptake and homeostasis, stress resistance, and root and embryo development. However, the HAK family has not yet been characterized in
. In this study, 40 putative
HAK genes (
) are identified and divided into four groups (Groups I-III and V) on the basis of phylogenetic analysis. Gene structure analysis revealed 10 conserved intron insertion sites across different groups. Collinearity analysis demonstrated that both allopolyploidization and small-scale duplication events contributed to the large expansion of
. Transcription factor (TF)-binding network construction,
-element analysis, and microRNA prediction revealed that the expression of
is regulated by multiple factors. Analysis of RNA-sequencing data further revealed extensive expression profiles of the
in groups II, III, and V, with limited expression in group I. Compared with group I, most of the
in groups II, III, and V were more upregulated by hormone induction based on RNA-sequencing data. Reverse transcription-quantitative polymerase reaction analysis revealed that the expression of eight
of groups I and V was markedly upregulated under K
-deficiency treatment. Collectively, our results provide valuable information and key candidate genes for further functional studies of
. |
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ISSN: | 1422-0067 1661-6596 1422-0067 |
DOI: | 10.3390/ijms21249487 |