The genome assembly and annotation of the white-lipped tree pit viper Trimeresurus albolabris

, also known as the white-lipped pit viper or white-lipped tree viper, is a highly venomous snake distributed across Southeast Asia and the cause of many snakebite cases. In this study, we report the first whole genome assembly of obtained with next-generation sequencing from a specimen collected in...

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Veröffentlicht in:GigaByte (Hong Kong, China) China), 2024-01, Vol.2024, p.gigabyte106-11
Hauptverfasser: Niu, Xiaotong, Lv, Yakui, Chen, Jin, Feng, Yueheng, Cui, Yilin, Lu, Haorong, Liu, Hui
Format: Artikel
Sprache:eng
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Zusammenfassung:, also known as the white-lipped pit viper or white-lipped tree viper, is a highly venomous snake distributed across Southeast Asia and the cause of many snakebite cases. In this study, we report the first whole genome assembly of obtained with next-generation sequencing from a specimen collected in Mengzi, Yunnan, China. After genome sequencing and assembly, the genome of this male individual was 1.51 Gb in length and included 38.42% repeat-element content. Using this genome, 21,695 genes were identified, and 99.17% of genes could be annotated using gene functional databases. Our genome assembly and annotation process was validated using a phylogenetic tree, which included six species and focused on single-copy genes of nuclear genomes. This research will contribute to future studies on biology and the genetic basis of snake venom.
ISSN:2709-4715
2709-4715
DOI:10.46471/gigabyte.106