Dataset for calculating lattice vectors (and anisotropy) of zebrafish cone mosaic
This dataset contains images of UV cone nuclei near the retinal margin in live zebrafish. These UV cone nuclei are labelled by transgenic expression of a fluorescent reporter (that is photoconvertible). The most important data are: 1. The zoomed-in (4X magnification) images of UV cone nuclei immedia...
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Zusammenfassung: | This dataset contains images of UV cone nuclei near the retinal margin in live zebrafish. These UV cone nuclei are labelled by transgenic expression of a fluorescent reporter (that is photoconvertible).
The most important data are:
1. The zoomed-in (4X magnification) images of UV cone nuclei immediately after photoconversion
2. The zoomed-in (4X magnification) images of UV cone nuclei 2-4 days after photoconversion
Also included is code for segmenting UV cone nuclei (both in image from immediately after photoconversion and in image from days later) and for shifting and rotating the two images to maximally align corresponding UV cone nuclei. After aligning corresponding UV cones, we compute triangulations over UV cone nuclei positions (for both images) and identify bonds that are common to both images. We use these common bonds to calculate the lattice vectors for the UV cone lattice. |
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DOI: | 10.7302/yfvb-n772 |