3D histogram representing features of potential motifs after the iterative alignment

Copyright information:Taken from "Bioinformatic identification of novel putative photoreceptor specific -elements"http://www.biomedcentral.com/1471-2105/8/407BMC Bioinformatics 2007;8():407-407.Published online 22 Oct 2007PMCID:PMC2225425. The vertical and horizontal axis plot the number o...

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Hauptverfasser: Danko, Charles G, McIlvain, Vera A, Maochun Qin, Knox, Barry E, Pertsov, Arkady M
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Sprache:eng
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Zusammenfassung:Copyright information:Taken from "Bioinformatic identification of novel putative photoreceptor specific -elements"http://www.biomedcentral.com/1471-2105/8/407BMC Bioinformatics 2007;8():407-407.Published online 22 Oct 2007PMCID:PMC2225425. The vertical and horizontal axis plot the number of non-overlapping occurrences of a motif, and the motif length in nucleotides (nt), respectively. Color shows the number (on a log-10 scale) of motifs with the given parameters. The box shows the approximate area that is likely to contain functional motifs. The circle shows the region containing the motif sample in Fig. 3A. Longer motifs (> 20 bp) are longer simple or interspersed repeats.
DOI:10.6084/m9.figshare.70668