movie_s1.mp4

movie_s1.mp4

Longitudinal samples from a large bowel resection. We place longitudinal samples collected prior to and following a large bowel resection in the context of samples from the AGP, the Earth Microbiome Project (https://www.ncbi.nlm.nih.gov/pubmed/29088705), intensive care unit patients (https://www.ncb...

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Hauptverfasser: Mann, Allison E., Amir, Amnon, Frazier, Angel, Gonzalez, Antonio, Fahimipour, Ashkaan K., Martino, Cameron, Lebrilla, Carlito, M. Lewis Jr, Cecil, Zhang, Chi, L. Lauber, Christian, Warinner, Christina, Callewaert, Chris, Knights, Dan, Willner, Dana, Galzerani, Daniela Domingos, Gonzalez, David J., Mills, David A., Chopra, Deepak, Berg-Lyons, Donna, Wolfe, Elaine, Pierce, Emily, TerAvest, Emily, Montassier, Emmanuel, Bolyen, Evan, Bushman, Frederic D., Ackermann, Gail, Church, George M., Ugrina, Ivo, Gilbert, Jack, Wozniak, Jacob M., Kerr, Jacqueline, Gaffney, James, D. Lewis, James, Morton, James T., Jansson, Janet K., Hampton-Marcell, Jarrad T., Bobe, Jason, Leach, Jeff, Raes, Jeroen, Metcalf, Jessica L., H. Chase, John, A. Eisen, Jonathan, C. Clemente, Jose, Gauglitz, Julia, Jacobs, Julian, W. Debelius, Justine, Zengler, Karsten, S. Pollard, Katherine, Swanson, Kelly S., Lewis, Kim, Goldasich, Lindsay DeRight, S. Zaramela, Livia, R. Thompson, Luke, Jankowska, Marta M., Blaser, Martin, Pirrung, Meg, Minson, Michael, Kurisu, Mike, Ajami, Nadim, Chia, Nicholas, White, Owen, D. Cani, Patrice, Wischmeyer, Paul, Gajer, Pawel, Strandwitz, Philip, Hugenholtz, Phillip, Park, Rachel S., R. Dunn, Robert, Mills, Robert H., Krajmalnik-Brown, Rosa, Ley, Ruth, T. Kelley, Scott, Klemmer, Scott, Mirarab, Siavash, Janssen, Stefan, Holmes, Susan, Schwartz, Tara, Eshoo-Anton, Tifani W., Kosciolek, Tomasz, Van Treuren, Will, Chen, Yingfeng, Zech Xu, Zhenjiang, Jarmusch, Alan, Pevzner, Pavel, Meleshko, Dmitry, Silva, Ricardo, Marotz, Clarisse, Smarr, Larry, Nguyen, Tanya, Mohimani, Hosein, Jiang, Lingjing, Swafford, Austin, Nguyen, Dominic, Sanders, Karenina, Benitez, Rodolfo Antonio Salido, Heale, Arthur Cole, V. Jeste, Dilip, Nguyen, Tanya T., Brennan, Caitriona, Abramson, Max
Format: Video
Sprache:eng
Schlagworte:
Microbial ecology
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Zusammenfassung:Longitudinal samples from a large bowel resection. We place longitudinal samples collected prior to and following a large bowel resection in the context of samples from the AGP, the Earth Microbiome Project (https://www.ncbi.nlm.nih.gov/pubmed/29088705), intensive care unit patients (https://www.ncbi.nlm.nih.gov/pubmed/27602409), "extreme" diet samples from (https://www.ncbi.nlm.nih.gov/pubmed/24336217), and samples from the Hadza hunter-gatherers (https://www.ncbi.nlm.nih.gov/pubmed/28839072). Unweighted UniFrac was computed on this sample set, and principal coordinates were assessed. Using EMPeror (https://www.ncbi.nlm.nih.gov/pubmed/24280061), we then animate the plot by connect successive data points gut resection time series, while rotating the data frame. We first show the how the extent of change in the microbial community, and how the samples immediately following surgery resemble fecal samples from ICU patients. In the background of the animation, a black line connects a plant rhizosphere sample to a marine sediment sample, which have the same unweighted UniFrac distance (0.78) as the longitudinal sample immediately preceding and immediately following surgery.
DOI:10.6084/m9.figshare.5936479