MOESM3 of Functional analysis of Plasmodium falciparum subpopulations associated with artemisinin resistance in Cambodia

Additional file 3. Mapping quality of the 167 samples. The Mapping quality (MQ: Root-mean-square mapping quality of covering reads) values (x-axis) averaged over 167 isolates for each SNP (y-axis) plotted along the genome. The average quality value for each SNP is calculated as the â values in diffe...

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Hauptverfasser:	Dwivedi, Ankit, Reynes, Christelle, Kuehn, Axel, Roche, Daniel, Khim, Nimol, Hebrard, Maxim, Milanesi, Sylvain, Rivals, Eric, Frutos, Roger, Menard, Didier, Mamoun, Choukri, Colinge, Jacques, Cornillot, Emmanuel
Format:	Bild
Sprache:	eng
Schlagworte:	Biological Sciences not elsewhere classified Chemical Sciences not elsewhere classified Environmental Sciences not elsewhere classified Evolutionary Biology FOS: Biological sciences FOS: Health sciences Genetics Infectious Diseases Medicine Physical Sciences not elsewhere classified Space Science Virology
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Zusammenfassung:	Additional file 3. Mapping quality of the 167 samples. The Mapping quality (MQ: Root-mean-square mapping quality of covering reads) values (x-axis) averaged over 167 isolates for each SNP (y-axis) plotted along the genome. The average quality value for each SNP is calculated as the â values in different isolates/number of isolates having that SNP. The red dotted vertical lines represent the last SNP in each chromosome and the blue dotted horizontal line represents the MQ value 29. a Average MQ values of all the unique SNPs along the full genome. b Average MQ values of all the unique SNPs in the coding core. SNPs in 100Â kb region at the starting and end of all the 14 chromosomes removed.
DOI:	10.6084/m9.figshare.5721625