Definition of FD and PD multiple alignments: DNA-binding domains of proteins 1JHG and 1LMB from are shown

Copyright information:Taken from "Detecting DNA-binding helix–turn–helix structural motifs using sequence and structure information"Nucleic Acids Research 2005;33(7):2129-2140.Published online 14 Apr 2005PMCID:PMC1079965.© The Author 2005. Published by Oxford University Press. All rights reserved Structures: the HTH motifs are highlighted in red. Multiple sequence alignments: all the shown alignments correspond to families Pfam seed alignments. The solid-lined boxes set the edges of multiple sequence alignments corresponding to the HTH sequences as found in the family templates 1JHG and 1LMB (red sequence).