Additional file 5 of Gut microbiota and immune profiling of microbiota-humanised versus wildtype mouse models of hepatointestinal schistosomiasis
Supplementary Material 5. Faecal bacterial taxa altered following Schistosoma mansoni (Sm) infection in faecal samples of D2 human microbiota-associated (D2 HMA) mice. Results of LEfSe and Kluskal-Wallis/Wilcoxon rank-sum test applied to the identification of differentially abundant bacteria between...
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creator | Stark, K. A. Rinaldi, G. Costain, A. Clare, S. Tolley, C. Almeida, A. McCarthy, C. Harcourt, K. Brandt, C. Lawley, T. D. Berriman, M. MacDonald, A. S. Forde-Thomas, J. E. Hulme, B. J. Hoffmann, K. F. Cantacessi, C. Cortés, A. |
description | Supplementary Material 5. Faecal bacterial taxa altered following Schistosoma mansoni (Sm) infection in faecal samples of D2 human microbiota-associated (D2 HMA) mice. Results of LEfSe and Kluskal-Wallis/Wilcoxon rank-sum test applied to the identification of differentially abundant bacteria between the faecal microbial communities of uninfected (Sm−; n = 4) and infected (Sm+) mice at 28 and 50 days post cercarial exposure [_d28 (n = 10) and _d50 (n = 8), respectively]. Taxa displaying p-value < 0.05 and LDA score ≥ 2 by LEfSe, and/or p-value < 0.05 by Kluskal-Wallis/Wilcoxon rank-sum test are included. A Summary of differentially abundant bacterial taxa as determined by LEfSe. B-E Statistically significant differences determined by LEfSe and/or Kluskal-Wallis/Wilcoxon rank-sum following comparative analyses of: B the three experimental groups (Sm−, Sm+_d28 and Sm+_d50); C microbiota profiles of Sm- mice and at 28 days post infection (Sm+_d28); D microbiota profiles of Sm- mice and at 50 days post infection (Sm+_d50); and E microbiota profiles of Sm+_d28 and Sm+_d50. |
doi_str_mv | 10.6084/m9.figshare.26738991 |
format | Dataset |
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A. ; Rinaldi, G. ; Costain, A. ; Clare, S. ; Tolley, C. ; Almeida, A. ; McCarthy, C. ; Harcourt, K. ; Brandt, C. ; Lawley, T. D. ; Berriman, M. ; MacDonald, A. S. ; Forde-Thomas, J. E. ; Hulme, B. J. ; Hoffmann, K. F. ; Cantacessi, C. ; Cortés, A.</creator><creatorcontrib>Stark, K. A. ; Rinaldi, G. ; Costain, A. ; Clare, S. ; Tolley, C. ; Almeida, A. ; McCarthy, C. ; Harcourt, K. ; Brandt, C. ; Lawley, T. D. ; Berriman, M. ; MacDonald, A. S. ; Forde-Thomas, J. E. ; Hulme, B. J. ; Hoffmann, K. F. ; Cantacessi, C. ; Cortés, A.</creatorcontrib><description>Supplementary Material 5. Faecal bacterial taxa altered following Schistosoma mansoni (Sm) infection in faecal samples of D2 human microbiota-associated (D2 HMA) mice. Results of LEfSe and Kluskal-Wallis/Wilcoxon rank-sum test applied to the identification of differentially abundant bacteria between the faecal microbial communities of uninfected (Sm−; n = 4) and infected (Sm+) mice at 28 and 50 days post cercarial exposure [_d28 (n = 10) and _d50 (n = 8), respectively]. Taxa displaying p-value < 0.05 and LDA score ≥ 2 by LEfSe, and/or p-value < 0.05 by Kluskal-Wallis/Wilcoxon rank-sum test are included. A Summary of differentially abundant bacterial taxa as determined by LEfSe. B-E Statistically significant differences determined by LEfSe and/or Kluskal-Wallis/Wilcoxon rank-sum following comparative analyses of: B the three experimental groups (Sm−, Sm+_d28 and Sm+_d50); C microbiota profiles of Sm- mice and at 28 days post infection (Sm+_d28); D microbiota profiles of Sm- mice and at 50 days post infection (Sm+_d50); and E microbiota profiles of Sm+_d28 and Sm+_d50.</description><identifier>DOI: 10.6084/m9.figshare.26738991</identifier><language>eng</language><publisher>figshare</publisher><subject>FOS: Biological sciences ; Microbiology</subject><creationdate>2024</creationdate><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>776,1888</link.rule.ids><linktorsrc>$$Uhttps://commons.datacite.org/doi.org/10.6084/m9.figshare.26738991$$EView_record_in_DataCite.org$$FView_record_in_$$GDataCite.org$$Hfree_for_read</linktorsrc></links><search><creatorcontrib>Stark, K. A.</creatorcontrib><creatorcontrib>Rinaldi, G.</creatorcontrib><creatorcontrib>Costain, A.</creatorcontrib><creatorcontrib>Clare, S.</creatorcontrib><creatorcontrib>Tolley, C.</creatorcontrib><creatorcontrib>Almeida, A.</creatorcontrib><creatorcontrib>McCarthy, C.</creatorcontrib><creatorcontrib>Harcourt, K.</creatorcontrib><creatorcontrib>Brandt, C.</creatorcontrib><creatorcontrib>Lawley, T. D.</creatorcontrib><creatorcontrib>Berriman, M.</creatorcontrib><creatorcontrib>MacDonald, A. S.</creatorcontrib><creatorcontrib>Forde-Thomas, J. E.</creatorcontrib><creatorcontrib>Hulme, B. J.</creatorcontrib><creatorcontrib>Hoffmann, K. F.</creatorcontrib><creatorcontrib>Cantacessi, C.</creatorcontrib><creatorcontrib>Cortés, A.</creatorcontrib><title>Additional file 5 of Gut microbiota and immune profiling of microbiota-humanised versus wildtype mouse models of hepatointestinal schistosomiasis</title><description>Supplementary Material 5. Faecal bacterial taxa altered following Schistosoma mansoni (Sm) infection in faecal samples of D2 human microbiota-associated (D2 HMA) mice. Results of LEfSe and Kluskal-Wallis/Wilcoxon rank-sum test applied to the identification of differentially abundant bacteria between the faecal microbial communities of uninfected (Sm−; n = 4) and infected (Sm+) mice at 28 and 50 days post cercarial exposure [_d28 (n = 10) and _d50 (n = 8), respectively]. Taxa displaying p-value < 0.05 and LDA score ≥ 2 by LEfSe, and/or p-value < 0.05 by Kluskal-Wallis/Wilcoxon rank-sum test are included. A Summary of differentially abundant bacterial taxa as determined by LEfSe. B-E Statistically significant differences determined by LEfSe and/or Kluskal-Wallis/Wilcoxon rank-sum following comparative analyses of: B the three experimental groups (Sm−, Sm+_d28 and Sm+_d50); C microbiota profiles of Sm- mice and at 28 days post infection (Sm+_d28); D microbiota profiles of Sm- mice and at 50 days post infection (Sm+_d50); and E microbiota profiles of Sm+_d28 and Sm+_d50.</description><subject>FOS: Biological sciences</subject><subject>Microbiology</subject><fulltext>true</fulltext><rsrctype>dataset</rsrctype><creationdate>2024</creationdate><recordtype>dataset</recordtype><sourceid>PQ8</sourceid><recordid>eNqdj0tOw0AQRGeTBUq4AYu-QIxNQoiXEeJzAPajxtOOW5qPNd2TKMfgxjASEXs2VZtXKj1j7rq22bX77X3om5GPMmGm5mH3tNn3fXdjvg7OsXKK6GFkT_AIaYS3ohB4yOmTkyJgdMAhlEgw5_SDcTxW7A9ZTyVgZCEHJ8pSBM7snV5mgpCK1HTkpY4mmlETRyVRrrcyTCyaJAVGYVmZxYhe6Pa3l2b7-vLx_L52qDiwkp0zB8wX27W2mtnQ26uZvZpt_jn7Bk0HZmw</recordid><startdate>20240815</startdate><enddate>20240815</enddate><creator>Stark, K. A.</creator><creator>Rinaldi, G.</creator><creator>Costain, A.</creator><creator>Clare, S.</creator><creator>Tolley, C.</creator><creator>Almeida, A.</creator><creator>McCarthy, C.</creator><creator>Harcourt, K.</creator><creator>Brandt, C.</creator><creator>Lawley, T. D.</creator><creator>Berriman, M.</creator><creator>MacDonald, A. S.</creator><creator>Forde-Thomas, J. E.</creator><creator>Hulme, B. J.</creator><creator>Hoffmann, K. F.</creator><creator>Cantacessi, C.</creator><creator>Cortés, A.</creator><general>figshare</general><scope>DYCCY</scope><scope>PQ8</scope></search><sort><creationdate>20240815</creationdate><title>Additional file 5 of Gut microbiota and immune profiling of microbiota-humanised versus wildtype mouse models of hepatointestinal schistosomiasis</title><author>Stark, K. A. ; Rinaldi, G. ; Costain, A. ; Clare, S. ; Tolley, C. ; Almeida, A. ; McCarthy, C. ; Harcourt, K. ; Brandt, C. ; Lawley, T. D. ; Berriman, M. ; MacDonald, A. S. ; Forde-Thomas, J. E. ; Hulme, B. J. ; Hoffmann, K. F. ; Cantacessi, C. ; Cortés, A.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-datacite_primary_10_6084_m9_figshare_267389913</frbrgroupid><rsrctype>datasets</rsrctype><prefilter>datasets</prefilter><language>eng</language><creationdate>2024</creationdate><topic>FOS: Biological sciences</topic><topic>Microbiology</topic><toplevel>online_resources</toplevel><creatorcontrib>Stark, K. A.</creatorcontrib><creatorcontrib>Rinaldi, G.</creatorcontrib><creatorcontrib>Costain, A.</creatorcontrib><creatorcontrib>Clare, S.</creatorcontrib><creatorcontrib>Tolley, C.</creatorcontrib><creatorcontrib>Almeida, A.</creatorcontrib><creatorcontrib>McCarthy, C.</creatorcontrib><creatorcontrib>Harcourt, K.</creatorcontrib><creatorcontrib>Brandt, C.</creatorcontrib><creatorcontrib>Lawley, T. D.</creatorcontrib><creatorcontrib>Berriman, M.</creatorcontrib><creatorcontrib>MacDonald, A. S.</creatorcontrib><creatorcontrib>Forde-Thomas, J. E.</creatorcontrib><creatorcontrib>Hulme, B. J.</creatorcontrib><creatorcontrib>Hoffmann, K. F.</creatorcontrib><creatorcontrib>Cantacessi, C.</creatorcontrib><creatorcontrib>Cortés, A.</creatorcontrib><collection>DataCite (Open Access)</collection><collection>DataCite</collection></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext_linktorsrc</fulltext></delivery><addata><au>Stark, K. A.</au><au>Rinaldi, G.</au><au>Costain, A.</au><au>Clare, S.</au><au>Tolley, C.</au><au>Almeida, A.</au><au>McCarthy, C.</au><au>Harcourt, K.</au><au>Brandt, C.</au><au>Lawley, T. D.</au><au>Berriman, M.</au><au>MacDonald, A. S.</au><au>Forde-Thomas, J. E.</au><au>Hulme, B. J.</au><au>Hoffmann, K. F.</au><au>Cantacessi, C.</au><au>Cortés, A.</au><format>book</format><genre>unknown</genre><ristype>DATA</ristype><title>Additional file 5 of Gut microbiota and immune profiling of microbiota-humanised versus wildtype mouse models of hepatointestinal schistosomiasis</title><date>2024-08-15</date><risdate>2024</risdate><abstract>Supplementary Material 5. Faecal bacterial taxa altered following Schistosoma mansoni (Sm) infection in faecal samples of D2 human microbiota-associated (D2 HMA) mice. Results of LEfSe and Kluskal-Wallis/Wilcoxon rank-sum test applied to the identification of differentially abundant bacteria between the faecal microbial communities of uninfected (Sm−; n = 4) and infected (Sm+) mice at 28 and 50 days post cercarial exposure [_d28 (n = 10) and _d50 (n = 8), respectively]. Taxa displaying p-value < 0.05 and LDA score ≥ 2 by LEfSe, and/or p-value < 0.05 by Kluskal-Wallis/Wilcoxon rank-sum test are included. A Summary of differentially abundant bacterial taxa as determined by LEfSe. B-E Statistically significant differences determined by LEfSe and/or Kluskal-Wallis/Wilcoxon rank-sum following comparative analyses of: B the three experimental groups (Sm−, Sm+_d28 and Sm+_d50); C microbiota profiles of Sm- mice and at 28 days post infection (Sm+_d28); D microbiota profiles of Sm- mice and at 50 days post infection (Sm+_d50); and E microbiota profiles of Sm+_d28 and Sm+_d50.</abstract><pub>figshare</pub><doi>10.6084/m9.figshare.26738991</doi><oa>free_for_read</oa></addata></record> |
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subjects | FOS: Biological sciences Microbiology |
title | Additional file 5 of Gut microbiota and immune profiling of microbiota-humanised versus wildtype mouse models of hepatointestinal schistosomiasis |
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