Additional file 3 of Variant-specific pathophysiological mechanisms of AFF3 differently influence transcriptome profiles

Additional file 3 of Variant-specific pathophysiological mechanisms of AFF3 differently influence transcriptome profiles

Additional file 3. This Excel file contains nine supplementary tables cataloging transcriptomic (S3-S4 and S7-S10) and Chromatin-IP (S5-S6) results and their intersection (S7) Table S3. DEGs (Differentially Expressed Genes) in biallelic loss-of-function (LoF/LoF) AFF3 HEK293T lines. Table S4. DEGs i...

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Hauptverfasser: Bassani, Sissy, Chrast, Jacqueline, Ambrosini, Giovanna, Voisin, Norine, Schütz, Frédéric, Brusco, Alfredo, Sirchia, Fabio, Turban, Lydia, Schubert, Susanna, Abou Jamra, Rami, Schlump, Jan-Ulrich, DeMille, Desiree, Bayrak-Toydemir, Pinar, Nelson, Gary Rex, Wong, Kristen Nicole, Duncan, Laura, Mosera, Mackenzie, Gilissen, Christian, Vissers, Lisenka E. L. M., Pfundt, Rolph, Kersseboom, Rogier, Yttervik, Hilde, Hansen, Geir Åsmund Myge, Smeland, Marie Falkenberg, Butler, Kameryn M., Lyons, Michael J., Carvalho, Claudia M. B., Zhang, Chaofan, Lupski, James R., Potocki, Lorraine, Flores-Gallegos, Leticia, Morales-Toquero, Rodrigo, Petit, Florence, Yalcin, Binnaz, Tuttle, Annabelle, Elloumi, Houda Zghal, McCormick, Lane, Kukolich, Mary, Klaas, Oliver, Horvath, Judit, Scala, Marcello, Iacomino, Michele, Operto, Francesca, Zara, Federico, Writzl, Karin, Maver, Aleš, Haanpää, Maria K., Pohjola, Pia, Arikka, Harri, Kievit, Anneke J. A., Calandrini, Camilla, Iseli, Christian, Guex, Nicolas, Reymond, Alexandre
Format: Dataset
Sprache:eng
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FOS: Biological sciences
Genetics
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Zusammenfassung:Additional file 3. This Excel file contains nine supplementary tables cataloging transcriptomic (S3-S4 and S7-S10) and Chromatin-IP (S5-S6) results and their intersection (S7) Table S3. DEGs (Differentially Expressed Genes) in biallelic loss-of-function (LoF/LoF) AFF3 HEK293T lines. Table S4. DEGs in homozygous dominant negative (DN/DN) KINSSHIP AFF3 HEK293T lines. Table S5. AFF3 ChIP-seq peaks in HEK293T cells. Table S6. AFF3 ChIP-seq peaks in M. musculus ES cells. Table S7. DEGs and AFF3 ChIP-seq peaks intersections. Table S8. DEGs in heterozygous loss-of-function (LoF/+) AFF3 HEK293T lines. Table S9. DEGs in compound heterozygote dominant negative/ loss-of-function (DN/LoF) AFF3 HEK293T lines. Table S10. DEGs in patients’ fibroblasts. Table S11. number of AFF3 reads at different location (in patients’ fibroblasts).
DOI:10.6084/m9.figshare.26723487