Additional file 8 of FixNCut: single-cell genomics through reversible tissue fixation and dissociation

Additional file 8: Table 7. This table contains the results of gene set enrichment analysis (GSEA) between fixed and fresh mouse colon samples by cell population. The analysis was performed using the fgsea package and multiple gene sets from MSigDB. Gene sets containing 10-300 genes were included, a...

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Hauptverfasser: Jiménez-Gracia, Laura, Marchese, Domenica, Nieto, Juan C., Caratù, Ginevra, Melón-Ardanaz, Elisa, Gudiño, Victoria, Roth, Sara, Wise, Kellie, Ryan, Natalie K., Jensen, Kirk B., Hernando-Momblona, Xavier, Bernardes, Joana P., Tran, Florian, Sievers, Laura Katharina, Schreiber, Stefan, van den Berge, Maarten, Kole, Tessa, van der Velde, Petra L., Nawijn, Martijn C., Rosenstiel, Philip, Batlle, Eduard, Butler, Lisa M., Parish, Ian A., Plummer, Jasmine, Gut, Ivo, Salas, Azucena, Heyn, Holger, Martelotto, Luciano G.
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Sprache:eng
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Zusammenfassung:Additional file 8: Table 7. This table contains the results of gene set enrichment analysis (GSEA) between fixed and fresh mouse colon samples by cell population. The analysis was performed using the fgsea package and multiple gene sets from MSigDB. Gene sets containing 10-300 genes were included, and results were considered significant if they had an FDR adjusted p-value < 0.05 and if >5 genes from the gene set overlapped with the differentially expressed genes, representing more than 15% of the gene set (see Methods).
DOI:10.6084/m9.figshare.26699426