Additional file 3 of Beyond gene-disease validity: capturing structured data on inheritance, allelic requirement, disease-relevant variant classes, and disease mechanism for inherited cardiac conditions

Additional file 3: Table S1. A table showing the curation of syndromic forms of (hypertrophic) cardiomyopathy that can have isolated left ventricular hypertrophy as the presenting feature: structured representation of inheritance, allelic requirement, disease-associated variant consequence, and vari...

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Hauptverfasser: Josephs, Katherine S., Roberts, Angharad M., Theotokis, Pantazis, Walsh, Roddy, Ostrowski, Philip J., Edwards, Matthew, Fleming, Andrew, Thaxton, Courtney, Roberts, Jason D., Care, Melanie, Zareba, Wojciech, Adler, Arnon, Sturm, Amy C., Tadros, Rafik, Novelli, Valeria, Owens, Emma, Bronicki, Lucas, Jarinova, Olga, Callewaert, Bert, Peters, Stacey, Lumbers, Tom, Jordan, Elizabeth, Asatryan, Babken, Krishnan, Neesha, Hershberger, Ray E., Chahal, C. Anwar A., Landstrom, Andrew P., James, Cynthia, McNally, Elizabeth M., Judge, Daniel P., van Tintelen, Peter, Wilde, Arthur, Gollob, Michael, Ingles, Jodie, Ware, James S.
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Sprache:eng
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Zusammenfassung:Additional file 3: Table S1. A table showing the curation of syndromic forms of (hypertrophic) cardiomyopathy that can have isolated left ventricular hypertrophy as the presenting feature: structured representation of inheritance, allelic requirement, disease-associated variant consequence, and variant classes reported with evidence of pathogenicity for each gene-disease pair. Tables S2–S5. Details of the filtering process of each pipeline for the 3 datasets (Table S2 - Set 1, Table S3 - Set2a and Table S4 -Set2b). Details of the demographics of the cohorts used in Set2a and Set2b are available in Table S5. Tables S6–S8. The same information that is presented in Additional File 2 is included here in xls format. Table S6. (CardiacG2P) includes a structured representation of inheritance and mechanism data for all curated gene-disease pairs. In addition this also includes information for 7 genes related to a syndrome where LVH is seen only with overt syndromic features. Table S7. (Narr_sum) has narrative summaries for each gene-disease pair as plain free text. Table S8. (Other_limited) is a list of gene-disease pairs where there is no established relationship (gene disease validity assertion from ClinGen); these are included for completeness.
DOI:10.6084/m9.figshare.26630725