Data from: Genomic diversity of the endosymbiotic bacteria of human head lice

This repository contains data associated with a study of endosymbiotic bacteria. Files beginning with "Phylo" indicate data used in or generated from phylogenetic analysis, beginning with "Cophy" indicated data used in phylogenetic comparisons of the host and endosymbiont, beginning with "Biogeography" indicating distributional data, beginning with "Skyline" indicating data used in generation of a Skyline plot. beginning with "VCFfiles" indicating vcf files resulting from alignment of reads to the genome of Ca. Riesia pediculicola, beginning with "Scaffolds" indicating partial genome assemblies of Ca. Riesia phthiripubis. Example software usage is included for certain phylogenetic software packages. Exact software used and the version of the software is document in the associated publication. VCF files are broken down into files containing structural variants, polymorphic sites, and fixed sites for each sample. File formats include fasta (.fa), newick (.tre), nexus (.nex), phylip (.phy), VCF (.vcf), and comma separated variable (.csv).