Additional file 2 of Telomeric retrotransposons show propensity to form G-quadruplexes in various eukaryotic species

Additional file 2: Table S1. Sequences used for Fig. 5. The scheme is based on the sequences and description in corresponding references. Table S2. Evaluation of G-forming potential of telomeric LINE elements. Table S3. Sequences of D. melanogaster Jockey elements used for construction of Fig. 2D. Table S4. Sequences used for RT based phylogeneitc tree construction in Figure S4A. Table S5. Sequences used for GAG based phylogeneitc tree construction in Figure S4A. Table S6. RT domains used for construction of Figure S12. Table S7. Telomeric and potential telomeric scaffolds used for PQS density assesment (Figure S5). All Ns were removed from the analysis but are included in used regions. All regions that we could not indentify faithfully as telomeric elements were removed from analysis and are not included in used regions. Table S8. Sequences used for visualisation of telomeric and potential telomeric scaffolds in Fig. 3. The "Start & Stop" postions correspond to visualized regions. Table S9. GAG DNA and AA sequences used for Fig. 4. Conserved domain coresponds to bp 1402–2055 and AA 468–685 in Dmel_HetA. Table S10. Pol (RT) DNA and AA sequences used for Fig. 4. Table S11. Sequences used for Figure S7. Aminoacid sequences can be obtained by simple translation of these sequences. Table S12. DNA and AA identity and similarity, including dn/ds ratios.