DNASP6 graph and tables

DNASP6 graph and table showing the sites of higher polymorphism with dN/dS ratios. Coding sequences were obtained by TBLASTN search of Zebrafish (Danio rerio) on TLR22. The aligned sequence set was created in Aliview using MUSCLE and saved as a ".fas" document. The graph and table were gen...

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Bibliographische Detailangaben
Hauptverfasser: Xiao, Bifeng, Hansen, Isabella, Lee, Atlas
Format: Bild
Sprache:eng
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Zusammenfassung:DNASP6 graph and table showing the sites of higher polymorphism with dN/dS ratios. Coding sequences were obtained by TBLASTN search of Zebrafish (Danio rerio) on TLR22. The aligned sequence set was created in Aliview using MUSCLE and saved as a ".fas" document. The graph and table were generated with the assigned coding region being 1 to 2883, the window length being 150 sites, and the step size being 60 sites. The analysis was made using "polymorphism and divergence" showing K(a)/K(b) (another name for dN/dS) as the y-axis variable and sites as the x-axis variable. The table shows sites of high polymorphism and the magnitude of the selection as both Pi(a)/Pi(s) and K(a)/K(b) ratios. This ultimately came to the conclusion of what kind of selection was influencing the development of the specific fish TLR22s.
DOI:10.6084/m9.figshare.22249075