Additional file 2 of Integration of multi-omics data reveals cis-regulatory variants that are associated with phenotypic differentiation of eastern from western pigs

Additional file 2: Table S1. Statistics of the resequencing data produced by this study. Table S2. Overview of the data that were downloaded from NCBI. Table S3. Statistics of the NCBI data—according to run_ID. Table S4. Primers used in this study. Table S5. Information on the luciferase reporter as...

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Hauptverfasser:	Liu, Yuwen, Fu, Yang, Yang, Yalan, Yi, Guoqiang, Lian, Jinmin, Xie, Bingkun, Yao, Yilong, Chen, Muya, Niu, Yongchao, Liu, Lei, Wang, Liyuan, Zhang, Yongsheng, Fan, Xinhao, Tang, Yijie, Yuan, Pengxiang, Zhu, Min, Li, Qiaowei, Zhang, Song, Chen, Yun, Wang, Binhu, He, Jieyu, Lu, Dan, Liachko, Ivan, Sullivan, Shawn T., Pang, Bin, Chen, Yaoqing, He, Xin, Li, Kui, Tang, Zhonglin
Format:	Dataset
Sprache:	eng
Schlagworte:	FOS: Biological sciences Genetics
Online-Zugang:	Volltext bestellen
Tags:	Tag hinzufügen Keine Tags, Fügen Sie den ersten Tag hinzu!

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Zusammenfassung:	Additional file 2: Table S1. Statistics of the resequencing data produced by this study. Table S2. Overview of the data that were downloaded from NCBI. Table S3. Statistics of the NCBI data—according to run_ID. Table S4. Primers used in this study. Table S5. Information on the luciferase reporter assay for 10 selected potential enhancers. Table S6. siRNA sequences used in this study. Table S7. BioNano optical maps of the Luchuan pig. Table S8. Statistics of the two haplotigs in each step of assembly processes. Table S9. Size distribution of presence variations in Luchuan assembly compared with Sscrofa11.1 reference. Table S10. Predicted protein-coding genes located in the regions of Luchuan pig presence variations compared with the Sscrofa11.1 reference. Table S11. GO enrichment of genes in expanded and contracted families of Luchuan pig (qvalue
DOI:	10.6084/m9.figshare.21117434