Datasets for Cornet et al. The taxonomy of the Trichophyton rubrum complex: a phylogenomic approach

├── Alignments│ ├── leel-3105-genes # DNA alignments of core genes│ └── orthofinder-3105-genes # Protein alignments of core genes├── AMAW-annotations │ ├── *-proteins.fasta # AMAW annotations├── Markers │ ├── OG0000291.fna # MYB DNA-binding domain-containing protein marker file │ └── OG0004200.fna # Ubiquitin-protein transferase marker file├── README├── SCaFoS│ ├── DNA # DNA concatenated dataset and informations│ └── PROT # Protein concatenated dataset and informations└── Unpublished-Large_DNA-phylogenies ├── DNA-large-BMGE_DNA-Codon1and2and3.tre # DNA large phylogeny: leel alignement, BMGE with codon option, no partition, GTRGAMMA ├── DNA-large-leel-Codon1and2and3.tre # DNA large phylogeny: leel alignment, no partition, GTRGAMMA ├── DNA-large-leel-Codon1and2.tre # DNA large phylogeny: leel alignment, only codon positions 1&2, no partition, GTRGAMMA └── DNA-large-leel-partitionCodon3.tre # DNA large phylogeny: leel alignment, partition on codon position 3, GTRGAMMA