Additional file 2 of Nanopore sequencing from liquid biopsy: analysis of copy number variations from cell-free DNA of lung cancer patients

Additional file 2 of Nanopore sequencing from liquid biopsy: analysis of copy number variations from cell-free DNA of lung cancer patients

Additional file 2: Supplementary tables. Spreadsheet file including analyzed data and statistics. Table S1. Case series and run statistics. Table S2. Performance of NanoGLADIATOR pipeline in “nocontrol” and “paired” mode. Table S3. Correlation of Illumina and Nanopore results. Table S4. Sensitivity,...

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Bibliographische Detailangaben
Hauptverfasser: Martignano, Filippo, Munagala, Uday, Crucitta, Stefania, Mingrino, Alessandra, Semeraro, Roberto, Re, Marzia Del, Petrini, Iacopo, Magi, Alberto, Conticello, Silvestro G.
Format: Dataset
Sprache:eng
Schlagworte:
FOS: Biological sciences
Genetics
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Zusammenfassung:Additional file 2: Supplementary tables. Spreadsheet file including analyzed data and statistics. Table S1. Case series and run statistics. Table S2. Performance of NanoGLADIATOR pipeline in “nocontrol” and “paired” mode. Table S3. Correlation of Illumina and Nanopore results. Table S4. Sensitivity, Specificity, Accuracy and Precision test of Nanopore approach. Table S5. Correlation of Nanopore results: subsampled BAMs (2 M reads) Vs full BAMs (“nocontrol” and “paired” mode). Table S6. Correlation of Illumina results: paired-end Vs single-end, and subsampled BAMs (2 M reads) Vs full BAMs. Table S7. Genes and genomic regions CNV results. Table S8. CNV detection performance at different tumor fractions.
DOI:10.6084/m9.figshare.13978907