The genome assembly and gene annotation of oat

The genome assembly and gene annotation of oat

The data include a summary of the genome assembly and annotation of oat. Chromosome-level genome assembly and scaffold-level genome assembly are both can be found in this dataset. Genome annotation files are provided in .fa file, .gff3 file and .cds file. The functional annotation of genes in oat is...

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Hauptverfasser: Li, Yan, Leveau, Aymeric, Zhao, Qiang, Feng, Qi, Lu, Hengyun, Miao, Jiashun, Xue, Zheyong, Martin, Azahara C., Wegel, Eva, Wang, Jing, Orme, Anastasia, Rey, Maria-Dolores, Karafiátová, Miroslava, Vrána, Jan, Steuernagel, Burkhard, Joynson, Ryan, Owen, Charlotte, Reed, James, Louveau, Thomas, Stephenson, Michael, Zhang, Lei, Huang, Xuehui, Huang, Tao, Fan, Danling, Zhou, Congcong, Tian, Qilin, Li, Wenjun, Lu, Yiqi, Chen, Jiaying, Zhao, Yan, Lu, Ying, Zhu, Chuanrang, Polturak, Guy, Casson, Rebecca, Hill, Lionel, Moore, Graham, Melton, Rachel, Hall, Neil, Wulff, Brande B H, Doležel, Jaroslav, Langdon, Tim, Han, Bin, Osbourn, Anne
Format: Dataset
Sprache:eng
Schlagworte:
Genomics
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Zusammenfassung:The data include a summary of the genome assembly and annotation of oat. Chromosome-level genome assembly and scaffold-level genome assembly are both can be found in this dataset. Genome annotation files are provided in .fa file, .gff3 file and .cds file. The functional annotation of genes in oat is using by interpro. Average read counts of genes in six difference tissues which include roottip, root, leaf, shoot, panicle adnd spikelet are listed in the dataset. By using genome assembly, the accurate prediction of transcription factor and annotation of FL_LTR is processed. Please see the README.txt file for the detailed information.
DOI:10.6084/m9.figshare.13546427