Additional file 1 of Concordance rate between copy number variants detected using either high- or medium-density single nucleotide polymorphism genotype panels and the potential of imputing copy number variants from flanking high density single nucleotide polymorphism haplotypes in cattle
Additional file 1: Fig. S1. Scatter plot of the percentage imputation accuracy against the percentage population frequency of each CNV. A CNV was deemed to be correctly imputed when the called copy number matched the imputed copy number. The red circles represent double deletions (n = 9 in Charolais...
Gespeichert in:
| Hauptverfasser: | , , , , |
|---|---|
| Format: | Bild |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext bestellen |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | |
|---|---|
| container_issue | |
| container_start_page | |
| container_title | |
| container_volume | |
| creator | Rafter, Pierce Gormley, Isobel Parnell, Andrew Kearney, John Berry, Donagh |
| description | Additional file 1: Fig. S1. Scatter plot of the percentage imputation accuracy against the percentage population frequency of each CNV. A CNV was deemed to be correctly imputed when the called copy number matched the imputed copy number. The red circles represent double deletions (n = 9 in Charolais, 15 in Limousin and Holstein-Friesian), green triangles represent single deletions (n = 34 in Charolais, n = 38 in Limousin, and 22 in Holstein-Friesian), blue squares represent normal state (n = 36 in Charolais, 40 in Limousin, and 24 in Holstein-Friesian), double duplications are represented by a purple cross (n = 2 in Charolais, n = 1 in Limousin and Holstein-Friesian). |
| doi_str_mv | 10.6084/m9.figshare.11937747 |
| format | Image |
| fullrecord | <record><control><sourceid>datacite_PQ8</sourceid><recordid>TN_cdi_datacite_primary_10_6084_m9_figshare_11937747</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>10_6084_m9_figshare_11937747</sourcerecordid><originalsourceid>FETCH-datacite_primary_10_6084_m9_figshare_119377473</originalsourceid><addsrcrecordid>eNqdkDFOxEAMRUNBgYAbbGEOkLDRRoSUaAXiAPSRN-MkFjOe0YwDyu2ZILajQFSW7G__518Uu3pfPewfm3vXVSNPacZIVV13h7Zt2quLuydjWNkLWhjZEtTgRzh6GXw0KANBRCU4kX4SCQw-rCCLO1GED4yMogkMKQ1KBpbEMgGxznk88zSX4CM4Mry40pAk1hU2TfaRZbDklQ1B8HZ1PoaZk4OJxOsacheFbAIUA_leFimJcsbMfOzCopvXrzxj9A5Gi_K-STYO-KP5jMF-uyfg_CyqWropLke0iW5_6nXRvDy_HV9Lg4oDK_UhssO49vW-35LuXdefk-7PSR_-ufYFrRqcAw</addsrcrecordid><sourcetype>Publisher</sourcetype><iscdi>true</iscdi><recordtype>image</recordtype></control><display><type>image</type><title>Additional file 1 of Concordance rate between copy number variants detected using either high- or medium-density single nucleotide polymorphism genotype panels and the potential of imputing copy number variants from flanking high density single nucleotide polymorphism haplotypes in cattle</title><source>DataCite</source><creator>Rafter, Pierce ; Gormley, Isobel ; Parnell, Andrew ; Kearney, John ; Berry, Donagh</creator><creatorcontrib>Rafter, Pierce ; Gormley, Isobel ; Parnell, Andrew ; Kearney, John ; Berry, Donagh</creatorcontrib><description>Additional file 1: Fig. S1. Scatter plot of the percentage imputation accuracy against the percentage population frequency of each CNV. A CNV was deemed to be correctly imputed when the called copy number matched the imputed copy number. The red circles represent double deletions (n = 9 in Charolais, 15 in Limousin and Holstein-Friesian), green triangles represent single deletions (n = 34 in Charolais, n = 38 in Limousin, and 22 in Holstein-Friesian), blue squares represent normal state (n = 36 in Charolais, 40 in Limousin, and 24 in Holstein-Friesian), double duplications are represented by a purple cross (n = 2 in Charolais, n = 1 in Limousin and Holstein-Friesian).</description><identifier>DOI: 10.6084/m9.figshare.11937747</identifier><language>eng</language><publisher>figshare</publisher><subject>Biological Sciences not elsewhere classified ; Biophysics ; Developmental Biology ; Ecology ; Evolutionary Biology ; FOS: Biological sciences ; Genetics ; Molecular Biology ; Neuroscience ; Physiology ; Virology</subject><creationdate>2020</creationdate><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>777,1888</link.rule.ids><linktorsrc>$$Uhttps://commons.datacite.org/doi.org/10.6084/m9.figshare.11937747$$EView_record_in_DataCite.org$$FView_record_in_$$GDataCite.org$$Hfree_for_read</linktorsrc></links><search><creatorcontrib>Rafter, Pierce</creatorcontrib><creatorcontrib>Gormley, Isobel</creatorcontrib><creatorcontrib>Parnell, Andrew</creatorcontrib><creatorcontrib>Kearney, John</creatorcontrib><creatorcontrib>Berry, Donagh</creatorcontrib><title>Additional file 1 of Concordance rate between copy number variants detected using either high- or medium-density single nucleotide polymorphism genotype panels and the potential of imputing copy number variants from flanking high density single nucleotide polymorphism haplotypes in cattle</title><description>Additional file 1: Fig. S1. Scatter plot of the percentage imputation accuracy against the percentage population frequency of each CNV. A CNV was deemed to be correctly imputed when the called copy number matched the imputed copy number. The red circles represent double deletions (n = 9 in Charolais, 15 in Limousin and Holstein-Friesian), green triangles represent single deletions (n = 34 in Charolais, n = 38 in Limousin, and 22 in Holstein-Friesian), blue squares represent normal state (n = 36 in Charolais, 40 in Limousin, and 24 in Holstein-Friesian), double duplications are represented by a purple cross (n = 2 in Charolais, n = 1 in Limousin and Holstein-Friesian).</description><subject>Biological Sciences not elsewhere classified</subject><subject>Biophysics</subject><subject>Developmental Biology</subject><subject>Ecology</subject><subject>Evolutionary Biology</subject><subject>FOS: Biological sciences</subject><subject>Genetics</subject><subject>Molecular Biology</subject><subject>Neuroscience</subject><subject>Physiology</subject><subject>Virology</subject><fulltext>true</fulltext><rsrctype>image</rsrctype><creationdate>2020</creationdate><recordtype>image</recordtype><sourceid>PQ8</sourceid><recordid>eNqdkDFOxEAMRUNBgYAbbGEOkLDRRoSUaAXiAPSRN-MkFjOe0YwDyu2ZILajQFSW7G__518Uu3pfPewfm3vXVSNPacZIVV13h7Zt2quLuydjWNkLWhjZEtTgRzh6GXw0KANBRCU4kX4SCQw-rCCLO1GED4yMogkMKQ1KBpbEMgGxznk88zSX4CM4Mry40pAk1hU2TfaRZbDklQ1B8HZ1PoaZk4OJxOsacheFbAIUA_leFimJcsbMfOzCopvXrzxj9A5Gi_K-STYO-KP5jMF-uyfg_CyqWropLke0iW5_6nXRvDy_HV9Lg4oDK_UhssO49vW-35LuXdefk-7PSR_-ufYFrRqcAw</recordid><startdate>20200305</startdate><enddate>20200305</enddate><creator>Rafter, Pierce</creator><creator>Gormley, Isobel</creator><creator>Parnell, Andrew</creator><creator>Kearney, John</creator><creator>Berry, Donagh</creator><general>figshare</general><scope>DYCCY</scope><scope>PQ8</scope></search><sort><creationdate>20200305</creationdate><title>Additional file 1 of Concordance rate between copy number variants detected using either high- or medium-density single nucleotide polymorphism genotype panels and the potential of imputing copy number variants from flanking high density single nucleotide polymorphism haplotypes in cattle</title><author>Rafter, Pierce ; Gormley, Isobel ; Parnell, Andrew ; Kearney, John ; Berry, Donagh</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-datacite_primary_10_6084_m9_figshare_119377473</frbrgroupid><rsrctype>images</rsrctype><prefilter>images</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Biological Sciences not elsewhere classified</topic><topic>Biophysics</topic><topic>Developmental Biology</topic><topic>Ecology</topic><topic>Evolutionary Biology</topic><topic>FOS: Biological sciences</topic><topic>Genetics</topic><topic>Molecular Biology</topic><topic>Neuroscience</topic><topic>Physiology</topic><topic>Virology</topic><toplevel>online_resources</toplevel><creatorcontrib>Rafter, Pierce</creatorcontrib><creatorcontrib>Gormley, Isobel</creatorcontrib><creatorcontrib>Parnell, Andrew</creatorcontrib><creatorcontrib>Kearney, John</creatorcontrib><creatorcontrib>Berry, Donagh</creatorcontrib><collection>DataCite (Open Access)</collection><collection>DataCite</collection></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext_linktorsrc</fulltext></delivery><addata><au>Rafter, Pierce</au><au>Gormley, Isobel</au><au>Parnell, Andrew</au><au>Kearney, John</au><au>Berry, Donagh</au><format>book</format><genre>unknown</genre><ristype>GEN</ristype><title>Additional file 1 of Concordance rate between copy number variants detected using either high- or medium-density single nucleotide polymorphism genotype panels and the potential of imputing copy number variants from flanking high density single nucleotide polymorphism haplotypes in cattle</title><date>2020-03-05</date><risdate>2020</risdate><abstract>Additional file 1: Fig. S1. Scatter plot of the percentage imputation accuracy against the percentage population frequency of each CNV. A CNV was deemed to be correctly imputed when the called copy number matched the imputed copy number. The red circles represent double deletions (n = 9 in Charolais, 15 in Limousin and Holstein-Friesian), green triangles represent single deletions (n = 34 in Charolais, n = 38 in Limousin, and 22 in Holstein-Friesian), blue squares represent normal state (n = 36 in Charolais, 40 in Limousin, and 24 in Holstein-Friesian), double duplications are represented by a purple cross (n = 2 in Charolais, n = 1 in Limousin and Holstein-Friesian).</abstract><pub>figshare</pub><doi>10.6084/m9.figshare.11937747</doi><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext_linktorsrc |
| identifier | DOI: 10.6084/m9.figshare.11937747 |
| ispartof | |
| issn | |
| language | eng |
| recordid | cdi_datacite_primary_10_6084_m9_figshare_11937747 |
| source | DataCite |
| subjects | Biological Sciences not elsewhere classified Biophysics Developmental Biology Ecology Evolutionary Biology FOS: Biological sciences Genetics Molecular Biology Neuroscience Physiology Virology |
| title | Additional file 1 of Concordance rate between copy number variants detected using either high- or medium-density single nucleotide polymorphism genotype panels and the potential of imputing copy number variants from flanking high density single nucleotide polymorphism haplotypes in cattle |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-17T21%3A40%3A24IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-datacite_PQ8&rft_val_fmt=info:ofi/fmt:kev:mtx:book&rft.genre=unknown&rft.au=Rafter,%20Pierce&rft.date=2020-03-05&rft_id=info:doi/10.6084/m9.figshare.11937747&rft_dat=%3Cdatacite_PQ8%3E10_6084_m9_figshare_11937747%3C/datacite_PQ8%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_id=info:pmid/&rfr_iscdi=true |