Additional file 1 of Concordance rate between copy number variants detected using either high- or medium-density single nucleotide polymorphism genotype panels and the potential of imputing copy number variants from flanking high density single nucleotide polymorphism haplotypes in cattle

Additional file 1: Fig. S1. Scatter plot of the percentage imputation accuracy against the percentage population frequency of each CNV. A CNV was deemed to be correctly imputed when the called copy number matched the imputed copy number. The red circles represent double deletions (n = 9 in Charolais, 15 in Limousin and Holstein-Friesian), green triangles represent single deletions (n = 34 in Charolais, n = 38 in Limousin, and 22 in Holstein-Friesian), blue squares represent normal state (n = 36 in Charolais, 40 in Limousin, and 24 in Holstein-Friesian), double duplications are represented by a purple cross (n = 2 in Charolais, n = 1 in Limousin and Holstein-Friesian).