Assemblies for "Linear time complexity de novo long read genome assembly with GoldRush"

Assemblies for "Linear time complexity de novo long read genome assembly with GoldRush"

GoldRush is a de novo genome assembly algorithm with linear time complexity in the number of input long sequencing reads. We tested GoldRush on Oxford Nanopore Technologies datasets with different base error profiles describing the genomes of three human cell lines (NA24385, HG01243 and HG02055), Or...

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Bibliographische Detailangaben
Hauptverfasser: Wong, Johnathan, Coombe, Lauren, Nikolić, Vladimir, Zhang, Emily, Nip, Ka Ming, Sidhu, Puneet, Warren, René L, Birol, Inanc
Format: Dataset
Sprache:eng
Schlagworte:
de novo assembly
long reads
nanopore
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Beschreibung
Zusammenfassung:GoldRush is a de novo genome assembly algorithm with linear time complexity in the number of input long sequencing reads. We tested GoldRush on Oxford Nanopore Technologies datasets with different base error profiles describing the genomes of three human cell lines (NA24385, HG01243 and HG02055), Oryza sativa (rice), and Solanum lycopersicum (tomato). Here, we provide the assemblies for the GoldRush, Flye, Redbean and Shasta assemblies of these long read datasets.
DOI:10.5281/zenodo.7884680