Data snapshot from the Protein Ligand Binding Database (PLBD)

Data snapshot from the Protein Ligand Binding Database (PLBD) === This data set contains tabular data snapshots from the PLBD. Data are provided in the time-stamped JSON [1] files. The time stamp in all files (the first line of each data file) records the moment when the data tables were retrieved from the PLBD server. Since the PLBD is a constantly evolving database, it is recommended that the latest data from the PLBD server [2] are downloaded and used, unless historic data are needed. The provided Makefile illustrates a possible download procedure. The tables here are provided solely to comply with the editorial policies of the "Scientific Data" journal. The ".json" files in the "outputs/main" directory contain the data; the ".nrec" files contain the number of records in the PLBD tables at the moment of download (a single decimal integer recorded on the second line of each ".nrec" file) and were used to request the the appropriate number of rows when downloading the "outputs/main/*.json" files. The meaning and the data type descriptions of the JSON file attributes are provided in the database description file "main-database-description.xml". This file is deposited as a separate digital object in Zenodo [3]. The layout of the JSON files follows ideas described in the JSON:API schema [4]. Layout of the archived file tree --- . ├── Makefile ├── README ├── README.pdf ├── inputs │ ├── tables.lst │ ├── tables.lst.history │ └── tables.lst.log ├── makefiles │ ├── available │ │ ├── Makelocal-download-json │ │ └── Makelocal-download-nrec │ └── enabled │ ├── Makelocal-download-json │ └── Makelocal-download-nrec └── outputs └── main [52 entries exceeds filelimit, not opening dir] References: 1. ECMA Standard. The JSON data interchange syntax. 2017, 1-16, URL: https://www.ecma-international.org/publications/files/ECMA-ST/ECMA-404.pdf 2. The Protein Ligand Binding Database (PLBD) server. URL: https://plbd.org/db/main [accessed: 2022-12-21T09:29+02:00] 3. Lingė, D.; Gedgaudas, M.; Merkys, A.; Petrauskas, V.; Vaitkus, A.; Grybauskas, A.; Paketurytė, V.; Zubrienė, A.; Zakšauskas, A.; Mickevičiūtė, A.; Smirnovienė, J.; Baranauskienė, L.; Čapkauskaitė, E.; Dudutienė, V.; Urniežius, E.; Konovalovas, A.; Kazlauskas, E.; Gražulis, S. & Matulis, D. PLBD (Protein Ligand Binding Database) table description XML file. Zenodo, 2022, DOI: https://doi.org/10.5281/ZENODO.7482008 4. Katz, Y.; Gebhardt, D.; Sullice, G.; Hanschke, J.; Kellen, T.; Klabnik, S. & Resnick, E. JSON:API versi