supplementary of UTUC-Normal

Accompanies a manuscript regarding the mutant clonal expansion in human morphologically normal urothelium (bladder and ureter). Contains: 1. Input, output and R code for clustering somatic mutations based on the Dirichlet process. 2. Input for the ABSOLUTE analysis (copy number alteration analysis)....

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Bibliographische Detailangaben
Hauptverfasser:	Ruoyan, Li, Yiqing, Du, Zhanghua, Chen, Deshu, Xu, Tianxin, Lin, Shanzhao, Jin, Gongwei, Wang, Ziyang, Liu, Min, Lu, Tao, Xu, Fan, Bai
Format:	Dataset
Sprache:	eng
Online-Zugang:	Volltext bestellen
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Beschreibung
Zusammenfassung:	Accompanies a manuscript regarding the mutant clonal expansion in human morphologically normal urothelium (bladder and ureter). Contains: 1. Input, output and R code for clustering somatic mutations based on the Dirichlet process. 2. Input for the ABSOLUTE analysis (copy number alteration analysis). 3. Input for the ReCapSeg analysis (copy number alteration analysis). 4. Output figures for the ABSOLUTE analysis (copy number alteration analysis). 5. Output segmentation files for the ABSOLUTE analysis (copy number alteration analysis). 6. Output for the Sequenza analysis (copy number alteration analysis). 7. Input VCF files for the mutational signature analysis. 8. VCF files containing all SNVs. 9. VCF files containing all INDELs.
DOI:	10.5281/zenodo.3726414