Phenotypic, weather, soil, and imputed genomic data for the apple REFPOP

Supporting datasets for the article "Integrative multi-environmental genomic prediction in apple" by Jung et al. (2024). Pheno_raw.xlsx – Eleven traits were assessed during up to five years from 2018 to 2022 (Year) at up to five locations* (Country). The traits evaluated were floral emergence (Flowering_begin), flowering intensity (Flowering_intensity), harvest date (Harvest_date), total fruit weight (Fruit_weight), fruit number (Fruit_number), single fruit weight (Fruit_weight_single), titratable acidity (Acidity), soluble solids content (Sugar), fruit firmness (Firmness), red over color (Color_over), and russet frequency (Russet_freq_all). Weather_raw.xlsx – Hourly measurements from 2018 to 2022 (Date) of temperature (Temperature), relative humidity (Humidity), and global radiation (Radiation) were obtained at five locations* (Location). Soil_raw.xlsx – Soil characteristics (Variable) were measured at five locations* (Group.1) and two soil depths (Group.2) in 2016. SNPs_final_2022.bed, SNPs_final_2022.bim, SNPs_final_2022.fam – imputed genomic dataset of 303,239 biallelic SNPs in the PLINK format. *The locations correspond to Belgium (BEL), Switzerland (CHE), Spain (ESP), France (FRA) and Italy (ITA).