scRNA-seq for article: Giardia intestinalis reshapes mucosal immunity toward a type-2 response that attenuates inflammatory bowel-like diseases - filtered and annotated data

Single-cell RNA-seq dataset from sorted IL-10+, TCRb+, CD4+ mouse small intestine lamina propria cells in naive or Giardia intestinalis-infected animals at 7 d.p.i. Data analyses and results are described in manuscript: "Giardia intestinalis reshapes mucosal immunity toward a Type 2 response that attenuates inflammatory bowel-like diseases". Data are Seurat objects in RDS format. Filtered-out potential doublets, low quality cells and dying cells (excluded cells with 5000 genes detected and cells with mitochondrial gene expression > 10%). Data normalization, scaling and integration performed using Seurat v 4.4.0. Full filtered dataset in the "alineGiardia.combined_v4.rds" file. T cells of interest only in the "T.seurat.rds" file.