Dataset title: Datasets, scripts and main output files for "Phylogeny, Biogeography and Morphological Evolution of the Treehopper-Like Leafhoppers (Hemiptera: Cicadellidae) Megophthalminae and Ulopinae"
The following seven zip files are compressed folders containing the input datasets/trees, main output files and the scripts of the related analyses performed in this study. I. ancestral_microhabitat_reconstruction.zip: contains four files, including two input files (microhabitats.csv, timetree.tre)...
Gespeichert in:
Hauptverfasser: | , , , , , |
---|---|
Format: | Dataset |
Sprache: | eng |
Schlagworte: | |
Online-Zugang: | Volltext bestellen |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
Zusammenfassung: | The following seven zip files are compressed folders containing the input datasets/trees, main output files and the scripts of the related analyses performed in this study.
I. ancestral_microhabitat_reconstruction.zip: contains four files, including two input files (microhabitats.csv, timetree.tre) and a script (simmap_microhabitat.R) for ancestral states reconstruction of microhabitat by make.simmap implemented in the R package phytools v1.5, as well as the main output file (ancestral_microhabitats.csv).
1. ancestral_microhabitats.csv: reconstructed ancestral microhabitats for each node.
2. microhabitats.csv: microhabitats of the studies species.
3. simmap_microhabitat.R: the R script of make.simmap for ancestral microhabitat reconstruction
4. timetree.tre: dated tree used for ancestral state reconstruction for microhabitat and morphological characters
II. ancestral_morphology_reconstruction.zip: contains six files, including an input file (morphology.csv) and a script (simmap_morphology.R) for ancestral states reconstruction of morphology by make.simmap implemented in the R package phytools v1.5, as well as four main output files(forewing_ancestral_state.csv, frontal_sutures_ancestral_state.csv, hind_wing_ancestral_state.csv, ocellus_ancestral_state.csv).
1. forewing_ancestral_state.csv: reconstructed ancestral states of the development of the forewing for each node.
2. frontal_sutures_ancestral_state.csv: reconstructed ancestral states of the development of frontal sutures for each node.
3. hind_wing_ancestral_state.csv: reconstructed ancestral states of the development of the hind wing for each node.
4. morphology.csv: the states of the development of ocellus, forewing, hing wing and frontal sutures for each studies species.
5. ocellus_ancestral_state.csv: reconstructed ancestral states of the development of the ocellus for each node.
6. simmap_morphology.R: the R script of make.simmap for ancestral state reconstruction of morphology
III. biogeographic_reconstruction.zip: contains four files, including three input files (dispersal_probablity.txt, distributions.csv, timetree_noOutgroup.tre) used for a stratified biogeographic analysis by BioGeoBEARS in RASP v4.2 and the main output file (DIVELIKE_result.txt).
1. dispersal_probablity.txt: relative dispersal probabilities among biogeographical regions at different geological epochs.
2. distributions.csv: current distributions of the studied species.
3. DIVELIKE_result.txt: BioGeoBEARS result of ancestral |
---|---|
DOI: | 10.13012/b2idb-1475719_v3 |