Effect of ABCB1 Multidrug Resistance Protein on Efficacy of Anti-Myeloma Drugs in Carfilzomib-Resistant Myeloma Model

Development of multidrug resistance is a major problem in treating cancer patients. Over-expression of a multidrug resistance protein MDR/P-gp/ABCB1 is recognized as a mediator of resistance to chemotherapy drugs in many cancers, including hematological malignancies. Recent studies have demonstrated that ABCB1 mediates resistance to a proteasome inhibitor carfilzomib. In this study we employ an isogenic ABCB1+ and ABCB1- pair of myeloma cell lines to investigate the effect of ABCB1 expression on a broader panel of anti-myeloma drugs. Expression of ABCB1 gene was assessed in publicly available gene expression datasets, including patient samples and murine models. ABCB1+ carfilzomib-resistant subline of myeloma cells AMO-1 was subject to CRISPR/Cas knock-out of ABCB1 gene. Two clones were isolated as a result of this procedure: one clone is ABCB1-negative and the other still bearing ABCB1. A panel of myeloma drugs consisting of carfilzomib, bortezomib, melflufen (melphalan flufenamide), melphalan, bendamustine, pomalidomide, iberdomide, panobinostat, doxorubicin, daunorubicin, vincristine, and paclitaxel was investigated in cytotoxicity assays using ABCB1+ and ABCB1- isogenic sublines of carfilzomib-adapted derivative of AMO-1. Myeloma multi-drug resistance (MMDR) score for each drug was calculated as a ratio between IC50 in ABCB1+ subline to IC50 in a ABCB1- subline. Apoptosis was measured by flow cytometry. According to the regression analysis of GSE136337, elevated expression of ABCB1 mRNA is associated with shorter PFS and OS in MM patients (Figure 1, A and B). Up-regulated murine Abcb1b expression was found in murine Vk*MYC myeloma tumors (GSE111921) prone to development of extramedullary disease (EMD) (Figure 1C). Cytotoxicity assays revealed a group of myeloma drugs vulnerable to elevated ABCB1 expression including carfilzomib, panobinostat, doxorubicin, daunorubicin, vincristine and paclitaxel (Figure 1D). No cytotoxicity against carfilzomib-resistant derivatives of AMO-1 myeloma cell line was observed for pomalidomide and iberdomide. Cytotoxicities of melflufen, bortezomib, melphalan, and bendamustine were only mildly affected by elevated ABCB1 expression (Figure 1D). In line with this observation, apoptosis upon carfilzomib treatment was reduced in ABCB1+ myeloma cells, whereas treatment with melflufen has resulted in equal cell death rates in both ABCB1- and ABCB1+ clones (Figure 1E). ABCB1 efflux pump is well recognized as a mediator of multi dru