Descriptive statistics of disallowed regions and various protein secondary structures in the context of studying twisted β-hairpins
A detailed analysis of polypeptide-chain backbone conformations was carried out for polypeptide-chain segments adjacent to β-turn regions, including the sites of disallowed conformations. A cross comparison of conformations was performed for disallowed regions of the Ramachandran plot and main types...
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Veröffentlicht in: | Biophysics (Oxford) 2016, Vol.61 (1), p.6-12 |
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Format: | Artikel |
Sprache: | eng |
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Zusammenfassung: | A detailed analysis of polypeptide-chain backbone conformations was carried out for polypeptide-chain segments adjacent to β-turn regions, including the sites of disallowed conformations. A cross comparison of conformations was performed for disallowed regions of the Ramachandran plot and main types of β-turns and adjacent secondary structures. Based on the results, disallowed region 2 (II, II') in the Ramachandran plot was shown to coincide mainly with β-hairpins and, more exactly, twisted β-hairpins. The frequency of residues with angles ϕ
i
, ψ
i
that fall in region 2 (II, II') in the latter is 140 times higher than in common β-hairpins. |
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ISSN: | 0006-3509 1555-6654 |
DOI: | 10.1134/S0006350916010243 |