Development of a Tetraplex PCR Assay for CYP 2D6 Genotyping in Degraded DNA Samples

CYP 2D6 polymorphism analysis is gaining increasing interest in forensic pharmacogenetics. Nevertheless, DNA recovered from forensic samples could be of poor quality and not suitable for long polymerase chain reaction required to type CYP 2D6 gene prior to SN aPshot minisequencing analysis performed...

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Veröffentlicht in:Journal of forensic sciences 2014-05, Vol.59 (3), p.690-695
Hauptverfasser: Riccardi, Laura N., Lanzellotto, Rossana, Falconi, Mirella, Ceccardi, Stefania, Bini, Carla, Pelotti, Susi
Format: Artikel
Sprache:eng
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Zusammenfassung:CYP 2D6 polymorphism analysis is gaining increasing interest in forensic pharmacogenetics. Nevertheless, DNA recovered from forensic samples could be of poor quality and not suitable for long polymerase chain reaction required to type CYP 2D6 gene prior to SN aPshot minisequencing analysis performed to define alleles with different enzymatic activity. We developed and validated following the guidelines of the Scientific Working Group on DNA Analysis Methods a tetraplex PCR yielding four amplicons of 597, 803, 1142, and 1659 bp encompassing the entire CYP 2D6 gene to analyze eleven SNP positions by SN aPshot minisequencing. Concordance, sensitivity, and specificity were assessed. The method, applied to thirty‐two forensic samples failed to amplify with long PCR , allowed the amplification of CYP 2D6 gene in 62.5% of degraded samples. The new tetraplex PCR appears a suitable method for CYP 2D6 analysis in forensic pharmacogenetics.
ISSN:0022-1198
1556-4029
DOI:10.1111/1556-4029.12358