Synthesis of 2′,4′-BNACOC bearing a purine nucleobase

Recently, we have synthesized pyrimidine derivatives of 2′,4′-BNACOC monomer, the sugar conformation of which was restricted in N-form by a seven-membered bridged structure. The oligonucleotides containing these monomers showed high affinity with complementary single-stranded RNA and significant res...

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Veröffentlicht in:Nucleic Acids Symposium Series 2006-11, Vol.50 (1), p.13-14
Hauptverfasser: Mitsuoka, Yasunori, Ohnishi, Ryo, Hari, Yoshiyuki, Obika, Satoshi, Imanishi, Takeshi
Format: Artikel
Sprache:eng
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Zusammenfassung:Recently, we have synthesized pyrimidine derivatives of 2′,4′-BNACOC monomer, the sugar conformation of which was restricted in N-form by a seven-membered bridged structure. The oligonucleotides containing these monomers showed high affinity with complementary single-stranded RNA and significant resistance to nuclease degradation. For an application to antisense methodology, it is important to synthesize 2′,4′-BNACOC monomers bearing a purine nucleobase. However, the formation of methyleneoxymethylene (COC) linkage in the purine derivatives failed under the acidic conditions used for the synthesis of 2′,4′-BNACOC with pyrimidine nucleobases. After several examinations, we successfully achieved the synthesis of 2′,4′-BNACOC monomers bearing a purine nucleobase via the formation of COC linkage using Pummerer-type reaction.
ISSN:0261-3166
1746-8272
DOI:10.1093/nass/nrl007