Topological aspects of theta-curves in cubic lattice

Knots and embedded graphs are useful models for simulating polymer chains. In particular, a theta curve motif is present in a circular protein with internal bridges. A theta-curve is a graph embedded in three-dimensional space which consists of three edges with shared endpoints at two vertices. If w...

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Veröffentlicht in:Journal of physics. A, Mathematical and theoretical Mathematical and theoretical, 2021-11, Vol.54 (45), p.455204, Article 455204
Hauptverfasser: No, Sungjong, Oh, Seungsang, Yoo, Hyungkee
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Sprache:eng
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Zusammenfassung:Knots and embedded graphs are useful models for simulating polymer chains. In particular, a theta curve motif is present in a circular protein with internal bridges. A theta-curve is a graph embedded in three-dimensional space which consists of three edges with shared endpoints at two vertices. If we cannot continuously transform a theta-curve into a plane without intersecting its strand during the deformation, then it is said to be nontrivial. A Brunnian theta-curve is a nontrivial theta-curve that becomes a trivial knot if any one edge is removed. In this paper we obtain qualitative results of these theta-curves, using the lattice stick number which is the minimal number of sticks glued end-to-end that are necessary to construct the theta-curve type in the cubic lattice. We present lower bounds of the lattice stick number for nontrivial theta-curves by 14, and Brunnian theta-curves by 15.
ISSN:1751-8113
1751-8121
DOI:10.1088/1751-8121/ac2ae9