Packing Structure of Antiparallel β-Sheet Polyalanine Region in a Sequential Model Peptide of Nephila clavipes Dragline Silk Studied Using 13 C Solid-State NMR and MD Simulation

Packing structures of polyalanine regions, which are considered to be the reason for the extremely high strength of spider dragline silks, were studied using a series of sequential peptides: (Glu) GlyGlyLeuGlyGlyGlnGlyAlaGly(Ala) GlyGlyAlaGlyGlnGlyGlyTyrGlyGly(Glu) ( = 3-8) using C solid-state NMR spectroscopy. The conformations of (Ala) in the freeze-dried peptides changed gradually with increasing n from random coils to α-helices with partial antiparallel β-sheet (AP-β) structures. Conversely, all the insolubilized peptides, = 6-8 after low-pH treatment and = 4-8 after formic acid/methanol treatment, formed AP-β structures with significant amounts of staggered packing arrangements. These results are different from previously obtained results for pure alanine oligopeptides, that is, AP-β (Ala) formed rectangular packing for less than = 6 but staggered packings for ≥ 7. The C-labeled peptides were also used to confirm the staggered packing arrangements from NMR dynamics. Furthermore, a MD simulation supported the observed results.