Associations of barn air quality parameters with ultrasonographic lung lesions, airway inflammation and infection in group-housed calves

•Increasing temperatures are associated with ultrasonographic lung consolidation.•Odds of severe ultrasonographic lesions increase when air velocity is >0.8 m/s.•Prolonged exposure to >4 ppm ammonia is associated with mild lung lesions.•Cluster analysis using multiple parameters can aid in evaluation of barn climate.•Bacterial air load is not linked with respiratory disease in group-housed calves. Barn climate is believed to play a major role in the bovine respiratory disease complex. However, the exact air quality parameters associated with (sub)clinical pneumonia or airway inflammation in calves are currently unknown. The objective of this cross-sectional study was to assess associations of air quality parameters with clinical signs, lung consolidation, pulmonary inflammation and infection in group-housed calves. In total, 60 beef and dairy farms were visited from January to April 2017 and 428 calves sampled. Measured air quality parameters included continuous 24-h measurements of ammonia concentration, relative humidity and temperature and punctual measurements of air velocity, ammonia, CO2 and bacterial air load. Calf sampling consisted of clinical examination, thoracic ultrasonography and broncho-alveolar lavage sampling for bacteriological and cytological analysis of broncho-alveolar lavage fluid (BALf). Average air temperature was 14.2 °C (standard deviation (SD) 4.4, range 5.5–23.9) and relative humidity 68.8 % (SD 8.9, range 52.2–91.6). Average ammonia concentration was 1.7 ppm (SD 0.9, range 0–10.0). Lung consolidations of ≥1 cm, ≥3 cm and ≥6 cm in depth were present in 41.1 % (176/428), 27.1 % (116/428) and 16.1 % (69/428) of the calves, respectively. Average pen temperature was positively associated with consolidations of ≥1 cm (P = 0.005), ≥3 cm (P = 0.002) and ≥6 cm (P < 0.01). Ammonia exposure, in hours>4 ppm, was associated with lung consolidation ≥1 cm (odds ratio (OR) = 1.73; confidence interval (CI) = 1.02–3.07; P = 0.04). Ammonia concentration was positively associated with BALf epithelial cell percentage (P = 0.01). Air velocity >0.8 m/s was associated with increased odds of lung consolidation of ≥3 cm (OR = 6.8; CI = 1.2–38.5; P = 0.04) and ≥6 cm (OR = 15.9; CI = 1.2–200.0; P = 0.03). The prevalence of lung consolidations ≥1 cm was higher in the draught (81.8 %; P = 0.0092) and warm, dry and ammonia accumulation clusters (54.2 %; P = 0.02) compared to the presumably normal cluster (31.6 %). In addition, in the warm, dry and ammonia cl