Hypergraph Analysis Toolbox for Chromosome Conformation

Recent advances in biological technologies, such as multi-way chromosome conformation capture (3C), require development of methods for analysis of multi-way interactions. Hypergraphs are mathematically tractable objects that can be utilized to precisely represent and analyze multi-way interactions....

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Veröffentlicht in:	arXiv.org 2022-12
Hauptverfasser:	Pickard, Joshua, Chen, Can, Rahmy Salman, Cooper Stansbury, Sion, Kim, Surana, Amit, Bloch, Anthony, Rajapakse, Indika
Format:	Artikel
Sprache:	eng
Schlagworte:	Chromosomes Graph theory Quantitative Biology - Quantitative Methods
Online-Zugang:	Volltext
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Beschreibung
Zusammenfassung:	Recent advances in biological technologies, such as multi-way chromosome conformation capture (3C), require development of methods for analysis of multi-way interactions. Hypergraphs are mathematically tractable objects that can be utilized to precisely represent and analyze multi-way interactions. Here we present the Hypergraph Analysis Toolbox (HAT), a software package for visualization and analysis of multi-way interactions in complex systems.
ISSN:	2331-8422
DOI:	10.48550/arxiv.2211.11166