Enumerative and Distributional Results for $d$-combining Tree-Child Networks
Tree-child networks are one of the most prominent network classes for modeling evolutionary processes which contain reticulation events. Several recent studies have addressed counting questions for bicombining tree-child networks in which every reticulation node has exactly two parents. We extend th...
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creator | Chang, Yu-Sheng Fuchs, Michael Liu, Hexuan Wallner, Michael Yu, Guan-Ru |
description | Tree-child networks are one of the most prominent network classes for
modeling evolutionary processes which contain reticulation events. Several
recent studies have addressed counting questions for bicombining tree-child
networks in which every reticulation node has exactly two parents. We extend
these studies to $d$-combining tree-child networks where every reticulation
node has now $d\geq 2$ parents, and we study one-component as well as general
tree-child networks. For the number of one-component networks, we derive an
exact formula from which asymptotic results follow that contain a stretched
exponential for $d=2$, yet not for $d \geq 3$. For general networks, we find a
novel encoding by words which leads to a recurrence for their numbers. From
this recurrence, we derive asymptotic results which show the appearance of a
stretched exponential for all $d \geq 2$. Moreover, we also give results on the
distribution of shape parameters (e.g., number of reticulation nodes, Sackin
index) of a network which is drawn uniformly at random from the set of all
tree-child networks with the same number of leaves. We show phase transitions
depending on $d$, leading to normal, Bessel, Poisson, and degenerate
distributions. Some of our results are new even in the bicombining case. |
doi_str_mv | 10.48550/arxiv.2209.03850 |
format | Article |
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modeling evolutionary processes which contain reticulation events. Several
recent studies have addressed counting questions for bicombining tree-child
networks in which every reticulation node has exactly two parents. We extend
these studies to $d$-combining tree-child networks where every reticulation
node has now $d\geq 2$ parents, and we study one-component as well as general
tree-child networks. For the number of one-component networks, we derive an
exact formula from which asymptotic results follow that contain a stretched
exponential for $d=2$, yet not for $d \geq 3$. For general networks, we find a
novel encoding by words which leads to a recurrence for their numbers. From
this recurrence, we derive asymptotic results which show the appearance of a
stretched exponential for all $d \geq 2$. Moreover, we also give results on the
distribution of shape parameters (e.g., number of reticulation nodes, Sackin
index) of a network which is drawn uniformly at random from the set of all
tree-child networks with the same number of leaves. We show phase transitions
depending on $d$, leading to normal, Bessel, Poisson, and degenerate
distributions. Some of our results are new even in the bicombining case.</description><identifier>DOI: 10.48550/arxiv.2209.03850</identifier><language>eng</language><subject>Mathematics - Combinatorics</subject><creationdate>2022-09</creationdate><rights>http://creativecommons.org/licenses/by/4.0</rights><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>228,230,780,885</link.rule.ids><linktorsrc>$$Uhttps://arxiv.org/abs/2209.03850$$EView_record_in_Cornell_University$$FView_record_in_$$GCornell_University$$Hfree_for_read</linktorsrc><backlink>$$Uhttps://doi.org/10.48550/arXiv.2209.03850$$DView paper in arXiv$$Hfree_for_read</backlink></links><search><creatorcontrib>Chang, Yu-Sheng</creatorcontrib><creatorcontrib>Fuchs, Michael</creatorcontrib><creatorcontrib>Liu, Hexuan</creatorcontrib><creatorcontrib>Wallner, Michael</creatorcontrib><creatorcontrib>Yu, Guan-Ru</creatorcontrib><title>Enumerative and Distributional Results for $d$-combining Tree-Child Networks</title><description>Tree-child networks are one of the most prominent network classes for
modeling evolutionary processes which contain reticulation events. Several
recent studies have addressed counting questions for bicombining tree-child
networks in which every reticulation node has exactly two parents. We extend
these studies to $d$-combining tree-child networks where every reticulation
node has now $d\geq 2$ parents, and we study one-component as well as general
tree-child networks. For the number of one-component networks, we derive an
exact formula from which asymptotic results follow that contain a stretched
exponential for $d=2$, yet not for $d \geq 3$. For general networks, we find a
novel encoding by words which leads to a recurrence for their numbers. From
this recurrence, we derive asymptotic results which show the appearance of a
stretched exponential for all $d \geq 2$. Moreover, we also give results on the
distribution of shape parameters (e.g., number of reticulation nodes, Sackin
index) of a network which is drawn uniformly at random from the set of all
tree-child networks with the same number of leaves. We show phase transitions
depending on $d$, leading to normal, Bessel, Poisson, and degenerate
distributions. Some of our results are new even in the bicombining case.</description><subject>Mathematics - Combinatorics</subject><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>GOX</sourceid><recordid>eNotz7tOwzAUgGEvDKjwAEx46OpwYvsk9ohCuUgRSCh75NTHYJELcpICb48onf7tlz7GrnLItEGEG5e-4yGTEmwGyiCcs3o3rgMlt8QDcTd6fhfnJcVuXeI0up6_0rz2y8zDlPjWb8V-Gro4xvGNN4lIVO-x9_yZlq8pfcwX7Cy4fqbLUzesud811aOoXx6eqttauKIEIUmjsx2iQ-tzQOlMwECWSkBUXSiIOg2-1AUSGqmV1yGHfWENlF5ZVBt2_b89ctrPFAeXfto_VntkqV_SVkd8</recordid><startdate>20220908</startdate><enddate>20220908</enddate><creator>Chang, Yu-Sheng</creator><creator>Fuchs, Michael</creator><creator>Liu, Hexuan</creator><creator>Wallner, Michael</creator><creator>Yu, Guan-Ru</creator><scope>AKZ</scope><scope>GOX</scope></search><sort><creationdate>20220908</creationdate><title>Enumerative and Distributional Results for $d$-combining Tree-Child Networks</title><author>Chang, Yu-Sheng ; Fuchs, Michael ; Liu, Hexuan ; Wallner, Michael ; Yu, Guan-Ru</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a670-2e45a9b55a59d1052a8f5fe9e70553bf6eeb40d7465e58243d4f10c69807d3953</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Mathematics - Combinatorics</topic><toplevel>online_resources</toplevel><creatorcontrib>Chang, Yu-Sheng</creatorcontrib><creatorcontrib>Fuchs, Michael</creatorcontrib><creatorcontrib>Liu, Hexuan</creatorcontrib><creatorcontrib>Wallner, Michael</creatorcontrib><creatorcontrib>Yu, Guan-Ru</creatorcontrib><collection>arXiv Mathematics</collection><collection>arXiv.org</collection></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext_linktorsrc</fulltext></delivery><addata><au>Chang, Yu-Sheng</au><au>Fuchs, Michael</au><au>Liu, Hexuan</au><au>Wallner, Michael</au><au>Yu, Guan-Ru</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Enumerative and Distributional Results for $d$-combining Tree-Child Networks</atitle><date>2022-09-08</date><risdate>2022</risdate><abstract>Tree-child networks are one of the most prominent network classes for
modeling evolutionary processes which contain reticulation events. Several
recent studies have addressed counting questions for bicombining tree-child
networks in which every reticulation node has exactly two parents. We extend
these studies to $d$-combining tree-child networks where every reticulation
node has now $d\geq 2$ parents, and we study one-component as well as general
tree-child networks. For the number of one-component networks, we derive an
exact formula from which asymptotic results follow that contain a stretched
exponential for $d=2$, yet not for $d \geq 3$. For general networks, we find a
novel encoding by words which leads to a recurrence for their numbers. From
this recurrence, we derive asymptotic results which show the appearance of a
stretched exponential for all $d \geq 2$. Moreover, we also give results on the
distribution of shape parameters (e.g., number of reticulation nodes, Sackin
index) of a network which is drawn uniformly at random from the set of all
tree-child networks with the same number of leaves. We show phase transitions
depending on $d$, leading to normal, Bessel, Poisson, and degenerate
distributions. Some of our results are new even in the bicombining case.</abstract><doi>10.48550/arxiv.2209.03850</doi><oa>free_for_read</oa></addata></record> |
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subjects | Mathematics - Combinatorics |
title | Enumerative and Distributional Results for $d$-combining Tree-Child Networks |
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