ESPResSo++ 2.0: Advanced methods for multiscale molecular simulation

Molecular simulation is a scientific tool dealing with challenges in material science and biology. This is reflected in a permanent development and enhancement of algorithms within scientific simulation packages. Here, we present computational tools for multiscale modeling developed and implemented...

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Veröffentlicht in:arXiv.org 2018-12
Hauptverfasser: Guzman, Horacio V, Tretyakov, Nikita, Kobayashi, Hideki, Fogarty, Aoife C, Kreis, Karsten, Krajniak, Jakub, Junghans, Christoph, Kremer, Kurt, Stuehn, Torsten
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Sprache:eng
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Zusammenfassung:Molecular simulation is a scientific tool dealing with challenges in material science and biology. This is reflected in a permanent development and enhancement of algorithms within scientific simulation packages. Here, we present computational tools for multiscale modeling developed and implemented within the ESPResSo++ package. These include the latest applications of the adaptive resolution scheme, the hydrodynamic interactions through a lattice Boltzmann solvent coupled to particle-based molecular dynamics, the implementation of the hierarchical strategy for equilibrating long-chained polymer melts and a heterogeneous spatial domain decomposition. The software design of ESPResSo++ has kept its highly modular C++ kernel with a Python user interface. Moreover, it was enhanced by automatic scripts parsing configurations from other established packages providing scientists with a rapid setup possibility for their simulations.
ISSN:2331-8422
DOI:10.48550/arxiv.1806.10841