BioNetGen 2.2: Advances in Rule-Based Modeling

BioNetGen is an open-source software package for rule-based modeling of complex biochemical systems. Version 2.2 of the software introduces numerous new features for both model specification and simulation. Here, we report on these additions, discussing how they facilitate the construction, simulati...

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Veröffentlicht in:	arXiv.org 2016-07
Hauptverfasser:	Harris, Leonard A, Hogg, Justin S, Jose-Juan Tapia, Sekar, John A P, Gupta, Sanjana A, Korsunsky, Ilya, Arora, Arshi, Barua, Dipak, Sheehan, Robert P, Faeder, James R
Format:	Artikel
Sprache:	eng
Schlagworte:	Computer simulation Modelling Open source software Quantitative Biology - Molecular Networks Quantitative Biology - Quantitative Methods Software Source code
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Beschreibung
Zusammenfassung:	BioNetGen is an open-source software package for rule-based modeling of complex biochemical systems. Version 2.2 of the software introduces numerous new features for both model specification and simulation. Here, we report on these additions, discussing how they facilitate the construction, simulation, and analysis of larger and more complex models than previously possible.
ISSN:	2331-8422
DOI:	10.48550/arxiv.1507.03572