Encyclopedia of bioinformatics and computational biology Volume 2 Topics
Gespeichert in:
| Weitere Verfasser: | , , , |
|---|---|
| Format: | Buch |
| Sprache: | English |
| Veröffentlicht: |
Amsterdam ; Boston ; Heidelberg
Elsevier
[2019]
|
| Schlagworte: | |
| Online-Zugang: | Inhaltsverzeichnis |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
MARC
| LEADER | 00000nam a2200000 cc4500 | ||
|---|---|---|---|
| 001 | BV045233342 | ||
| 003 | DE-604 | ||
| 005 | 20190214 | ||
| 007 | t| | ||
| 008 | 181016s2019 xx a||| |||| 00||| eng d | ||
| 020 | |a 9780128153659 |c hbk |9 978-0-12-815365-9 | ||
| 035 | |a (OCoLC)1075671585 | ||
| 035 | |a (DE-599)BVBBV045233342 | ||
| 040 | |a DE-604 |b ger |e rda | ||
| 041 | 0 | |a eng | |
| 049 | |a DE-355 |a DE-29T |a DE-188 | ||
| 245 | 1 | 0 | |a Encyclopedia of bioinformatics and computational biology |n Volume 2 |p Topics |c editors in chief: Shoba Ranganathan, Macquarie University, Sydney, NSW, Australia, Michael Gribskov, Purdue University, West Lafayette, IN, United States, Kenta Nakai, The University of Tokyo, Tokyo, Japan, Christian Schönbach, Nazarbayev University, School of Science and Technology, Department of Biology, Astana, Kazakhstan |
| 264 | 1 | |a Amsterdam ; Boston ; Heidelberg |b Elsevier |c [2019] | |
| 300 | |a xxiii, 1161 Seiten |b Illustrationen, Diagramme | ||
| 336 | |b txt |2 rdacontent | ||
| 337 | |b n |2 rdamedia | ||
| 338 | |b nc |2 rdacarrier | ||
| 655 | 7 | |0 (DE-588)4143413-4 |a Aufsatzsammlung |2 gnd-content | |
| 700 | 1 | |a Gaeta, Bruno |0 (DE-588)1178078922 |4 edt | |
| 700 | 1 | |a Ranganathan, Shoba |4 edt | |
| 700 | 1 | |a Gribskov, Michael |4 edt | |
| 700 | 1 | |a Nakai, Kenta |0 (DE-588)1178077462 |4 edt | |
| 773 | 0 | 8 | |w (DE-604)BV045233335 |g 2 |
| 856 | 4 | 2 | |m Digitalisierung UB Regensburg - ADAM Catalogue Enrichment |q application/pdf |u http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=030621682&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |3 Inhaltsverzeichnis |
| 943 | 1 | |a oai:aleph.bib-bvb.de:BVB01-030621682 | |
Datensatz im Suchindex
| DE-BY-UBR_call_number | 88/WC 7700 R196 |
|---|---|
| DE-BY-UBR_katkey | 6065515 |
| DE-BY-UBR_location | 88 |
| DE-BY-UBR_media_number | 069039297156 |
| _version_ | 1822741786048593921 |
| adam_text | CONTENTS OF VOLUME 2
Editors in Chief v
Volume Editors vii
List of Contributors for Volume 2 xv
Preface xxiii
VOLUME 2
The Gene Ontology
Pascale Gaudet 1
Protein Functional Annotation
Pier Luigi Martelli, Giuseppe Profiti, and Rita Casadio 8
Protein Post-Translational Modification Prediction
Chi N1 Pang and Marc R Wilkins 15
Protein Properties
Kentaro Tomii 28
The Evolution of Protein Family Databases
Teresa K Attwood and Alex L Mitchell 34
Transmembrane Domain Prediction
Pier Luigi Martelli, Castrense Savojardo, Giuseppe Profiti, and Rita Casadio 46
Prediction of Protein Localization
Kenta Nakai and Kenichiro Itnai 53
Proteome Informatics
Fredericjue Lisacek 60
Proteomics Data Representation and Databases
Thibault Robin 76
Proteomics Mass Spectrometry Data Analysis Tools
Aivett Bilbao 84
Biological Databases
Sarinder K Dhillon 96
Functional Genomics
Shalini Kaushik, Sandeep Kaushik, and Deepak Sharma 118
Transcription Factor Databases
Edgar Wingender, Alexander Kel, and Mathias Krull 134
Protein-DNA Interactions
Preeti Pandey, Sabeeha Hasnain, and Shandar Ahmad 142
Gene Regulatory Network Review
Enze Liu, Lang Li, and Lijun Cheng 155
MicroRNA and IncRNA Databases and Analysis
Xiangying Sun and Michael Gribskov 165
IX
x Contents of Volume 2
Gene-Gene Interactions: An Essential Component to Modeling Complexity for Precision Medicine
Molly A Hall Brian S Cole, and Jason H Moore 171
Genome Informatics
Anil K Kesarwani, Ankit Malhotra, Anuj Srivastava, Guruprasad Ananda, Haitham Ashoor, Parveen Kumar,
Rupesh K Kesharwani, Vishal K Sarsani, Yi Li, Joshy George, and R Krishna Murty Karuturi 178
Genome Annotation
Josep F Abril and Sergi Castellano 195
Repeat in Genomes: How and Why You Should Consider Them in Genome Analyses?
Emmanuelle Lerat 210
Bioinformatics Approaches for Studying Alternative Splicing
Prasoon K Thakur, Hukam C Rawal, Mina Obuca, and Sandeep Kaushik 221
Genome-Wide Association Studies
William S Bush 235
Gene Mapping
Kelly L Williams 242
Genome Databases and Browsers
Dean Southwood and Shoba Ranganathan 251
Comparative and Evolutionary Genomics
Takeshi Kawashima 257
Genome Alignment
Tetsushi Yada 268
Phylogenetic Footprinting
Hiroyuki Toh 284
Chromatin: A Semi-Structured Polymer
Wayne K Dawson, Michal Lazniewski, and Dariusz Plewczynski 288
Nucleosome Positioning
Vladimir B Teifand Christopher T Clarkson 308
Learning Chromatin Interaction Using Hi-C Datasets
Wing-Kin Sung 31g
Transcriptome Informatics
Liang Chen and Garry Wong 324
Transcriptomic Databases
Askhat Molkenov, Altyn Zhelambayeva, Akbar Yermekov, Saule Mussurova, Aliya Sarlzytbayeva,
Yerbol Kalykhbergenov, Zhaxybay Zhumadilov, and Ulykbek Kairov 341
Next Generation Sequence Analysis
Christian Rockmann, Christoph Endrullat, Marcus Frohme, and Heike Pospisil 352
Transcriptomic Data Normalization
Fatemeh Vafaee, Hamed Dashti, and Hamid Alinejad-Rokny 364
Differential Expression From Microarray and RNA-seq Experiments
Marc Delord 372
Expression Clustering
Xiaoxin Ye and Joshua WK Ho 3gg
Metabolome Analysis
Saravanan Dayalan, Jianguo Xia, Rachel A Spicer, Reza Salek, and Lite Roessner
396
Contents ot Volume 2 xi
Mass Spectrometry-Based Metabolomic Analysis
Russell Pickford 410
Metabolie Profiling
Joram M Posma 426
Metabolie Models
Jean-Marc Schwartz and Zita Soons 438
Protein Structural Bioinformatics: An Overview
M Michael Gromiha, Raju Nagarajan, and Samuel Selvaraj 445
Protein Structure Databases
David R Armstrong, John M Berrisford, Matthew J Conroy, Alice R Clark, Deepti Gupta, and
Abhik M ukhopadhyay 460
Protein Structure Classification
Natalie L Dawson, Sayoni Das, Jonathan G Lees, and Christine Orengo 472
Secondary Structure Prediction
Jonas Reeb and Burkhard Rost 488
Protein Three-Dimensional Structure Prediction
Sanne Abein, Klaas Anton Feenstra, and Jaap Heringa 497
Protein Structure Analysis and Validation
Tsuyoshi Shirai 512
Protein Structure Visualization
Sandeep Kaushik and Soumya Lipsa Rath 520
Computational Tools for Structural Analysis of Proteins
Luciano A Abriata 539
Molecular Dynamics and Simulation
Liangzhen Zheng, Amr A Alhossary, Chee-Keong Kwoh, and Yuguang Mu 550
Nucleic-Acid Structure Database
Airy Sanjeev, Venkata SK Mattaparthi, and Sandeep Kaushik 567
RNA Structure Prediction
Junichi Jwakiri and Kiyoshi Asai 575
Rational Structure-Based Drug Design
Varun Khanna, Shoba Ranganathan, and Nikolai Petrovsky 585
Chemoinformatics: From Chemical Art to Chemistry in Silico
Jaroslaw Polanski 601
Fingerprints and Pharmacophores
Daniela Schuster 619
Public Chemical Databases
Sunghwan Kim 628
Chemical Similarity and Substructure Searches
Nils M Kriege, Lina Humbeck, and Oliver Koch 640
Binding Site Comparison - Software and Applications
Christiane Ehrt, Tobias Brinkjost, and Oliver Koch 650
Quantitative Structure-Activity Relationship (QSAR): Modeling Approaches to Biological Applications
Swathik Claranda Peter, Jaspreet Kaur Dhanja, Vidhi Malik, Navaneethan Radhakrishnan, Mannu Jayakanthan,
and Durai Sundar 661
Pharmacophore Development
Balakumar Chandrasekaran, Nikhil Agrawal, and Sandeep Kaushik 677
xii Contents of Volume 2
Introduction of Docking-Based Virtual Screening Workflow Using Desktop Personal Computer
Muhammad Yusuf, Ari Hardianto, Muchtaridi Muchtaridi, Rina F Nuwarda, and Toto Subroto 688
Molecular Phylogenetics
Michael A Charleston
Evolutionary Models
David A Liberies and Barbara R Holland 712
Molecular Clock
Cara Van Der Wal and Simon YW Ho 719
Phylogenetic Tree Rooting
Richard ) Edwards 727
Tree Evaluation and Robustness Testing
Mahendra Mariadassou, Avner Bar-Hen, and Hirohisa Kishino 736
Applications of the Coalescent for the Evolutionary Analysis of Genetic Data
Miguel Arenas 746
Population Genetics
Conrad f Burden 759
Computational Systems Biology
Sucheendra K Palaniappan, Ayako Yachie-Kinoshita, and Samik Ghosh 789
Pathway Informatics
Sarita Poonia, Smriti Chawla, Sandeep Kaushik, and Debarka Sengupta 796
Network Inference and Reconstruction in Bioinformatics
Paolo fieri, Lorenzo Farina, Manuela Petti, Laura Astolfi, Paola Pad, and Filippo Castiglione 805
Graphlets and Motifs in Biological Networks
Laurentino Quiroga Moreno 814
Protein-Protein Interactions: An Overview
Edson L Folador, Sandeep Tiwari, Camila E Da Paz Barbosa, Syed B Jamal, Marco Da Costa Schulze,
Debmalya Barh, and Vasco Azevedo 821
Prediction of Protein-Protein Interactions: Looking Through the Kaleidoscope
Anna Laddach,
Sun Sook Chung, and Franca Fraternali 834
Protein-Protein Interaction Databases
Ashwini Patil 849
Computational Approaches for Modeling Signal Transduction Networks
Zhongming Zhao and Junfeng Xia 856
Cell Modeling and Simulation
Ayako Yachie-Kinoshita and Kazunari Kaizu 864
Quantitative Modelling Approaches
Filippo Castiglione, Emiliano Mancini, Marco Pedicini, and Abdul Salam Jarrah 874
Data Formats for Systems Biology and Quantitative Modeling
Martin Golebiewski 884
Computational Lipidomics
Josch K Pauling 894
Multi-Scale Modelling in Biology
Socrates Dokos
900
Contents of Volume 2 xiii
Computational Immunogenetics
Marta Gomez Perosanz, Giulia Russo, Jose Luis Sanchez-Trincado Lopez, Marzio Pennisi, Pedro A Reche,
Adrian Shepherd, and Francesco Pappakrdo 906
Immunoinformatics Databases
Christine LP Eng, Tin Wee Tan, and Joo Chuan Tong 931
Study of Human Antibody Responses From Analysis of Immunoglobulin Gene Sequences
Katherine JL Jackson 940
Epitope Predictions
Roman Kogay and Christian Schonbach 952
Immunoglobulin Clonotype and Ontogeny Inference
Pazit Polak, Ramit Mehr, and Gur Yaari 972
Quantitative immunology by Data Analysis Using Mathematical Models
Shoya Iwanami and Shingo Iwami 984
Bioimage Informatics
Sorayya Malek, Mogeeb Mosleh, Sarinder K Dhillon, and Pozi Milow 993
Bioimage Databases
Arpah Abu and Sarinder K Dhillon 1011
Segmentation Techniques for Bioimages
Saowaluck Kaewkamnerd, Apichart Intarapanich, and Sissades Tongsima 1028
Translational and Disease Bioinformatics
Sandeep Kaushik, Chakrawarti Prasun, and Deepak Sharma 1046
Translational Bioinformatics Databases
Onkar Singh, Nai-Wen Chang, Hong-Jie Dai, and Jitendra Jonnagaddala 1058
Electronic Health Record Integration
Hong Yung Yip, Nur A Taib, Haris A Khan, and
Sarinder K Dhillon 1063
Genome Databases and Browsers for Cancer
Madhu Goyal 1077
Text Mining Resources for Bioinformatics
Sandeep Kaushik, Priyanka Baloni, and Charu K Midha 1083
Preclinical: Drug Target Identification and Validation in Human
Meena K Sakharkar, Karthic Rajamanickam, Chidambaram S Babu, Jitender Madan, Ramesh Chandra, and
Jian Yang 1093
Biomedical Text Mining
Hagit Shatkay 1099
Biodiversity Databases and Tools
Lina AM Zalani, Kho S Jye, Shaarmini Balakrishnan, and
Sarinder K Dhillon 1110
Challenges in Creating Online Biodiversity Repositories With Taxonomic Classification
Mohd NM Ali, Amy Y Then Hui, and Sarinder K Dhillon 1124
Ecological Networks
Kazuhiro Takemoto and Midori Hda 1131
Dedicated Bioinformatics Analysis Hardware
Bertil Schmidt and Andreas Hildebrandt 1142
Computational Pipelines and Workflows in Bioinformatics
Jeremy Leipzig
1151
|
| any_adam_object | 1 |
| author2 | Gaeta, Bruno Ranganathan, Shoba Gribskov, Michael Nakai, Kenta |
| author2_role | edt edt edt edt |
| author2_variant | b g bg s r sr m g mg k n kn |
| author_GND | (DE-588)1178078922 (DE-588)1178077462 |
| author_facet | Gaeta, Bruno Ranganathan, Shoba Gribskov, Michael Nakai, Kenta |
| building | Verbundindex |
| bvnumber | BV045233342 |
| ctrlnum | (OCoLC)1075671585 (DE-599)BVBBV045233342 |
| format | Book |
| fullrecord | <?xml version="1.0" encoding="UTF-8"?><collection xmlns="http://www.loc.gov/MARC21/slim"><record><leader>01651nam a2200325 cc4500</leader><controlfield tag="001">BV045233342</controlfield><controlfield tag="003">DE-604</controlfield><controlfield tag="005">20190214 </controlfield><controlfield tag="007">t|</controlfield><controlfield tag="008">181016s2019 xx a||| |||| 00||| eng d</controlfield><datafield tag="020" ind1=" " ind2=" "><subfield code="a">9780128153659</subfield><subfield code="c">hbk</subfield><subfield code="9">978-0-12-815365-9</subfield></datafield><datafield tag="035" ind1=" " ind2=" "><subfield code="a">(OCoLC)1075671585</subfield></datafield><datafield tag="035" ind1=" " ind2=" "><subfield code="a">(DE-599)BVBBV045233342</subfield></datafield><datafield tag="040" ind1=" " ind2=" "><subfield code="a">DE-604</subfield><subfield code="b">ger</subfield><subfield code="e">rda</subfield></datafield><datafield tag="041" ind1="0" ind2=" "><subfield code="a">eng</subfield></datafield><datafield tag="049" ind1=" " ind2=" "><subfield code="a">DE-355</subfield><subfield code="a">DE-29T</subfield><subfield code="a">DE-188</subfield></datafield><datafield tag="245" ind1="1" ind2="0"><subfield code="a">Encyclopedia of bioinformatics and computational biology</subfield><subfield code="n">Volume 2</subfield><subfield code="p">Topics</subfield><subfield code="c">editors in chief: Shoba Ranganathan, Macquarie University, Sydney, NSW, Australia, Michael Gribskov, Purdue University, West Lafayette, IN, United States, Kenta Nakai, The University of Tokyo, Tokyo, Japan, Christian Schönbach, Nazarbayev University, School of Science and Technology, Department of Biology, Astana, Kazakhstan</subfield></datafield><datafield tag="264" ind1=" " ind2="1"><subfield code="a">Amsterdam ; Boston ; Heidelberg</subfield><subfield code="b">Elsevier</subfield><subfield code="c">[2019]</subfield></datafield><datafield tag="300" ind1=" " ind2=" "><subfield code="a">xxiii, 1161 Seiten</subfield><subfield code="b">Illustrationen, Diagramme</subfield></datafield><datafield tag="336" ind1=" " ind2=" "><subfield code="b">txt</subfield><subfield code="2">rdacontent</subfield></datafield><datafield tag="337" ind1=" " ind2=" "><subfield code="b">n</subfield><subfield code="2">rdamedia</subfield></datafield><datafield tag="338" ind1=" " ind2=" "><subfield code="b">nc</subfield><subfield code="2">rdacarrier</subfield></datafield><datafield tag="655" ind1=" " ind2="7"><subfield code="0">(DE-588)4143413-4</subfield><subfield code="a">Aufsatzsammlung</subfield><subfield code="2">gnd-content</subfield></datafield><datafield tag="700" ind1="1" ind2=" "><subfield code="a">Gaeta, Bruno</subfield><subfield code="0">(DE-588)1178078922</subfield><subfield code="4">edt</subfield></datafield><datafield tag="700" ind1="1" ind2=" "><subfield code="a">Ranganathan, Shoba</subfield><subfield code="4">edt</subfield></datafield><datafield tag="700" ind1="1" ind2=" "><subfield code="a">Gribskov, Michael</subfield><subfield code="4">edt</subfield></datafield><datafield tag="700" ind1="1" ind2=" "><subfield code="a">Nakai, Kenta</subfield><subfield code="0">(DE-588)1178077462</subfield><subfield code="4">edt</subfield></datafield><datafield tag="773" ind1="0" ind2="8"><subfield code="w">(DE-604)BV045233335</subfield><subfield code="g">2</subfield></datafield><datafield tag="856" ind1="4" ind2="2"><subfield code="m">Digitalisierung UB Regensburg - ADAM Catalogue Enrichment</subfield><subfield code="q">application/pdf</subfield><subfield code="u">http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=030621682&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA</subfield><subfield code="3">Inhaltsverzeichnis</subfield></datafield><datafield tag="943" ind1="1" ind2=" "><subfield code="a">oai:aleph.bib-bvb.de:BVB01-030621682</subfield></datafield></record></collection> |
| genre | (DE-588)4143413-4 Aufsatzsammlung gnd-content |
| genre_facet | Aufsatzsammlung |
| id | DE-604.BV045233342 |
| illustrated | Illustrated |
| indexdate | 2024-12-24T06:53:00Z |
| institution | BVB |
| isbn | 9780128153659 |
| language | English |
| oai_aleph_id | oai:aleph.bib-bvb.de:BVB01-030621682 |
| oclc_num | 1075671585 |
| open_access_boolean | |
| owner | DE-355 DE-BY-UBR DE-29T DE-188 |
| owner_facet | DE-355 DE-BY-UBR DE-29T DE-188 |
| physical | xxiii, 1161 Seiten Illustrationen, Diagramme |
| publishDate | 2019 |
| publishDateSearch | 2019 |
| publishDateSort | 2019 |
| publisher | Elsevier |
| record_format | marc |
| spellingShingle | Encyclopedia of bioinformatics and computational biology |
| subject_GND | (DE-588)4143413-4 |
| title | Encyclopedia of bioinformatics and computational biology |
| title_auth | Encyclopedia of bioinformatics and computational biology |
| title_exact_search | Encyclopedia of bioinformatics and computational biology |
| title_full | Encyclopedia of bioinformatics and computational biology Volume 2 Topics editors in chief: Shoba Ranganathan, Macquarie University, Sydney, NSW, Australia, Michael Gribskov, Purdue University, West Lafayette, IN, United States, Kenta Nakai, The University of Tokyo, Tokyo, Japan, Christian Schönbach, Nazarbayev University, School of Science and Technology, Department of Biology, Astana, Kazakhstan |
| title_fullStr | Encyclopedia of bioinformatics and computational biology Volume 2 Topics editors in chief: Shoba Ranganathan, Macquarie University, Sydney, NSW, Australia, Michael Gribskov, Purdue University, West Lafayette, IN, United States, Kenta Nakai, The University of Tokyo, Tokyo, Japan, Christian Schönbach, Nazarbayev University, School of Science and Technology, Department of Biology, Astana, Kazakhstan |
| title_full_unstemmed | Encyclopedia of bioinformatics and computational biology Volume 2 Topics editors in chief: Shoba Ranganathan, Macquarie University, Sydney, NSW, Australia, Michael Gribskov, Purdue University, West Lafayette, IN, United States, Kenta Nakai, The University of Tokyo, Tokyo, Japan, Christian Schönbach, Nazarbayev University, School of Science and Technology, Department of Biology, Astana, Kazakhstan |
| title_short | Encyclopedia of bioinformatics and computational biology |
| title_sort | encyclopedia of bioinformatics and computational biology topics |
| topic_facet | Aufsatzsammlung |
| url | http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=030621682&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
| volume_link | (DE-604)BV045233335 |
| work_keys_str_mv | AT gaetabruno encyclopediaofbioinformaticsandcomputationalbiologyvolume2 AT ranganathanshoba encyclopediaofbioinformaticsandcomputationalbiologyvolume2 AT gribskovmichael encyclopediaofbioinformaticsandcomputationalbiologyvolume2 AT nakaikenta encyclopediaofbioinformaticsandcomputationalbiologyvolume2 |